Variant report

Variant	rs9918557
Chromosome Location	chr7:121549706-121549707
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10452995	1.00[CEU][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10488056	1.00[EUR][1000 genomes]
rs1206491	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs17143870	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17143872	1.00[CEU][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17143879	1.00[CEU][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17143901	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1916881	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1916882	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2402592	1.00[EUR][1000 genomes]
rs57309972	1.00[EUR][1000 genomes]
rs58082429	1.00[EUR][1000 genomes]
rs58096965	1.00[EUR][1000 genomes]
rs58853157	1.00[EUR][1000 genomes]
rs59694519	1.00[EUR][1000 genomes]
rs60930011	1.00[EUR][1000 genomes]
rs73434977	1.00[EUR][1000 genomes]
rs73434983	1.00[EUR][1000 genomes]
rs73434988	1.00[EUR][1000 genomes]
rs73434990	1.00[EUR][1000 genomes]
rs73434994	1.00[EUR][1000 genomes]
rs73434996	1.00[EUR][1000 genomes]
rs73435002	1.00[EUR][1000 genomes]
rs73437103	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73437114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73437125	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73437144	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73437150	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs960540	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429808	chr7:121384049-121600049	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121522600-121550000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:121523200-121552600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr7:121528000-121550000	Weak transcription	Brain Germinal Matrix	brain
4	chr7:121531200-121558200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:121534800-121554200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:121541000-121552000	Weak transcription	NHEK	skin
7	chr7:121541200-121552200	Weak transcription	Fetal Brain Female	brain
8	chr7:121542200-121553200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr7:121545600-121551400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:121545600-121571400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:121545800-121549800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:121546000-121550000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr7:121546000-121553600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:121549000-121550000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:121549200-121550200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr7:121549200-121550600	Genic enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:121549400-121550400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:121549400-121552200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr7:121549600-121550200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr7:121549600-121552600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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