Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1924315	0.85[EUR][1000 genomes]
rs2181760	0.90[EUR][1000 genomes]
rs2324257	0.89[JPT][hapmap]
rs2875298	0.82[JPT][hapmap]
rs6563698	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs732858	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7335060	0.86[EUR][1000 genomes]
rs7338314	0.86[EUR][1000 genomes]
rs7988864	0.83[EUR][1000 genomes]
rs8253	0.88[JPT][hapmap]
rs9315675	0.84[EUR][1000 genomes]
rs9532371	0.83[EUR][1000 genomes]
rs9532372	0.83[EUR][1000 genomes]
rs9548729	0.83[EUR][1000 genomes]
rs9548731	0.82[EUR][1000 genomes]
rs9548733	0.86[EUR][1000 genomes]
rs9548738	0.81[EUR][1000 genomes]
rs9576776	0.86[EUR][1000 genomes]
rs9576777	0.86[EUR][1000 genomes]
rs987848	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39885200-39888400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr13:39885800-39890800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr13:39886200-39887800	Weak transcription	NHEK	skin
4	chr13:39886200-39890800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:39886200-39890800	Weak transcription	Right Atrium	heart
6	chr13:39886200-39891200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:39886200-39891400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:39886400-39887800	Weak transcription	HMEC	breast
9	chr13:39886400-39891000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr13:39886400-39891000	Weak transcription	Fetal Muscle Leg	muscle
11	chr13:39886400-39891000	Weak transcription	Left Ventricle	heart
12	chr13:39886400-39896600	Weak transcription	Aorta	Aorta
13	chr13:39886600-39890200	Weak transcription	Fetal Heart	heart
14	chr13:39886600-39891000	Weak transcription	HSMMtube	muscle
15	chr13:39887200-39890200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr13:39887400-39889600	Weak transcription	Primary monocytes fromperipheralblood	blood

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