Variant report

Variant	rs7335060
Chromosome Location	chr13:39890376-39890377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12856032	0.82[EUR][1000 genomes]
rs1333439	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1924315	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2025410	0.86[EUR][1000 genomes]
rs2147127	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2324258	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2985186	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4340188	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7318557	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7321424	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7338314	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs746076	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs747383	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7986707	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7988864	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7995844	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9285131	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9315671	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9315675	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9532371	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9532372	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9548722	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9548729	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9548731	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9548733	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548738	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs957184	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9576776	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9576777	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs987848	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39885800-39890800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:39886200-39890800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:39886200-39890800	Weak transcription	Right Atrium	heart
4	chr13:39886200-39891200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:39886200-39891400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr13:39886400-39891000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr13:39886400-39891000	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:39886400-39891000	Weak transcription	Left Ventricle	heart
9	chr13:39886400-39896600	Weak transcription	Aorta	Aorta
10	chr13:39886600-39891000	Weak transcription	HSMMtube	muscle
11	chr13:39888000-39891400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:39889000-39891400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr13:39889600-39890400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr13:39890200-39890800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr13:39890200-39891000	Enhancers	Fetal Heart	heart
16	chr13:39890200-39892200	Enhancers	Adipose Nuclei	Adipose

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