Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12856032	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1333439	0.83[EUR][1000 genomes]
rs1924315	0.87[EUR][1000 genomes]
rs2147127	0.83[EUR][1000 genomes]
rs2181760	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2985186	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4340188	0.83[EUR][1000 genomes]
rs6563698	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7318557	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7321424	0.83[EUR][1000 genomes]
rs7335060	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7338314	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7986707	0.83[EUR][1000 genomes]
rs7988864	0.86[EUR][1000 genomes]
rs7995844	0.83[EUR][1000 genomes]
rs9285131	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9315671	0.83[EUR][1000 genomes]
rs9315675	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9532371	0.86[EUR][1000 genomes]
rs9532372	0.86[EUR][1000 genomes]
rs9548722	0.81[EUR][1000 genomes]
rs9548729	0.86[EUR][1000 genomes]
rs9548731	0.87[EUR][1000 genomes]
rs9548733	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9548738	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs957184	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9576776	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9576777	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs987848	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv996813	chr13:39929705-39937070	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39925200-39936800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr13:39925200-39938600	Weak transcription	Aorta	Aorta
3	chr13:39928400-39936400	Weak transcription	Left Ventricle	heart
4	chr13:39928400-39939000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:39928400-39939000	Weak transcription	Right Atrium	heart
6	chr13:39928800-39938800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:39929200-39938800	Weak transcription	Fetal Heart	heart

Quick Search: