Variant report

Variant	rs9548738
Chromosome Location	chr13:39906654-39906655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12856032	0.83[EUR][1000 genomes]
rs1333439	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1924315	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2025410	0.81[EUR][1000 genomes]
rs2147127	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2324258	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2985186	0.84[EUR][1000 genomes]
rs4340188	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7318557	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7321424	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7335060	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7338314	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs746076	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7986707	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7988864	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7995844	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9285131	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9315671	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9315675	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9532371	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9532372	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9548722	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548729	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9548731	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9548733	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs957184	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9576776	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9576777	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs987848	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39900400-39906800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr13:39903200-39910000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:39904200-39908200	Weak transcription	Gastric	stomach
4	chr13:39904200-39923600	Weak transcription	Ovary	ovary

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