Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1333439	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1924315	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2147127	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2324258	0.92[CEU][hapmap]
rs4340188	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7318557	0.96[CEU][hapmap]
rs7321424	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7335060	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7338314	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs747383	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7986707	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7988864	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7995844	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9315671	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9315675	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9532371	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9532372	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548722	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9548729	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9548731	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9548733	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9548738	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9576776	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9576777	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs987848	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv900007	chr13:39801283-39849423	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39847800-39850200	Enhancers	Brain Substantia Nigra	brain
2	chr13:39848200-39849400	Enhancers	Right Atrium	heart
3	chr13:39848200-39849600	Enhancers	Adipose Nuclei	Adipose
4	chr13:39848200-39849600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr13:39848600-39849400	Enhancers	Left Ventricle	heart
6	chr13:39848600-39849600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr13:39848800-39849600	Enhancers	Brain Angular Gyrus	brain
8	chr13:39848800-39849600	Enhancers	Brain Anterior Caudate	brain
9	chr13:39848800-39849800	Enhancers	Brain Cingulate Gyrus	brain
10	chr13:39849000-39849400	Enhancers	Lung	lung

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