Variant report

Variant	rs2025678
Chromosome Location	chr6:11225013-11225014
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11224747..11226720-chr6:11494534..11496251,2	MCF-7	breast:
2	chr6:11201732..11205267-chr6:11223600..11226865,3	MCF-7	breast:
3	chr6:11189538..11191483-chr6:11224224..11227023,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2025677	0.83[CEU][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4713247	0.92[EUR][1000 genomes]
rs6457107	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6917551	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs943007	0.84[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11211600-11229200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:11211800-11229200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:11215400-11232000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:11216200-11228800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:11216400-11229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:11216600-11228800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:11216600-11229000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:11216600-11231800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:11217800-11229400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:11219200-11228800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:11219800-11225800	Enhancers	Fetal Heart	heart
12	chr6:11220000-11228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:11220000-11229200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:11220000-11230800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:11220600-11226200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:11220600-11229400	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:11220800-11228800	Weak transcription	Fetal Intestine Large	intestine
18	chr6:11220800-11229200	Weak transcription	Fetal Intestine Small	intestine
19	chr6:11221000-11228800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:11221000-11229200	Enhancers	Fetal Brain Male	brain
21	chr6:11221000-11229400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:11221200-11229600	Weak transcription	HSMM	muscle
23	chr6:11221800-11225200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr6:11221800-11225400	Enhancers	Fetal Thymus	thymus
25	chr6:11221800-11226600	Enhancers	Thymus	Thymus
26	chr6:11221800-11228000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:11222200-11225200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:11222200-11229000	Weak transcription	Fetal Stomach	stomach
29	chr6:11222400-11225200	Enhancers	Placenta Amnion	Placenta Amnion
30	chr6:11222400-11225600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr6:11222400-11225800	Genic enhancers	Primary B cells from cord blood	blood
32	chr6:11222600-11225800	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr6:11222800-11229200	Weak transcription	Brain Germinal Matrix	brain
34	chr6:11223000-11225200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:11223000-11226200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:11223200-11225400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
37	chr6:11223200-11230600	Transcr. at gene 5' and 3'	HepG2	liver
38	chr6:11223400-11225400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:11223400-11225400	Enhancers	NHEK	skin
40	chr6:11223400-11226200	Weak transcription	Brain Hippocampus Middle	brain
41	chr6:11223400-11228200	Weak transcription	Colonic Mucosa	Colon
42	chr6:11223400-11229200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr6:11223400-11232000	Weak transcription	Pancreas	Pancrea
44	chr6:11223600-11226200	Weak transcription	Fetal Lung	lung
45	chr6:11223600-11226400	Enhancers	NHDF-Ad	bronchial
46	chr6:11223800-11225200	Enhancers	Right Ventricle	heart
47	chr6:11223800-11225600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:11223800-11225600	Enhancers	Dnd41	blood
49	chr6:11224000-11225400	Enhancers	Placenta	Placenta
50	chr6:11224000-11225800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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