Variant report

Variant	rs6457107
Chromosome Location	chr6:11220417-11220418
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11209766..11214077-chr6:11214391..11221251,7	K562	blood:
2	chr6:11218771..11220943-chr6:11225201..11226927,2	MCF-7	breast:
3	chr6:11213657..11217222-chr6:11219207..11223440,6	MCF-7	breast:
4	chr6:11219669..11221481-chr6:11366413..11368482,2	MCF-7	breast:
5	chr6:11215763..11222711-chr6:11227480..11234166,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2025677	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2025678	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2146341	0.80[CEU][hapmap]
rs4713247	0.85[CEU][hapmap];0.91[MEX][hapmap];0.92[EUR][1000 genomes]
rs6917551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs941982	0.84[MEX][hapmap]
rs943007	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11204200-11222400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:11211600-11222200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:11211600-11229200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:11211800-11229200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:11212600-11221800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr6:11212600-11222400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:11213000-11222400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:11213000-11223600	Enhancers	Fetal Lung	lung
9	chr6:11213800-11221800	Weak transcription	NHEK	skin
10	chr6:11213800-11222800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:11214000-11222400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:11214200-11224400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:11214600-11221000	Enhancers	Adipose Nuclei	Adipose
14	chr6:11214800-11223000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:11215400-11222600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:11215400-11224000	Weak transcription	HSMMtube	muscle
17	chr6:11215400-11224600	Weak transcription	Esophagus	oesophagus
18	chr6:11215400-11232000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:11216200-11220600	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr6:11216200-11224600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr6:11216200-11228800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:11216400-11221800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:11216400-11221800	Weak transcription	Brain Germinal Matrix	brain
24	chr6:11216400-11229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:11216600-11222200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:11216600-11223400	Weak transcription	NHDF-Ad	bronchial
27	chr6:11216600-11228800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:11216600-11229000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:11216600-11231800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:11216800-11220800	Enhancers	Right Atrium	heart
31	chr6:11216800-11224800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:11217000-11222400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:11217200-11220800	Enhancers	Fetal Intestine Large	intestine
34	chr6:11217400-11220600	Enhancers	Pancreas	Pancrea
35	chr6:11217400-11220800	Enhancers	Right Ventricle	heart
36	chr6:11217400-11221000	Enhancers	Brain Cingulate Gyrus	brain
37	chr6:11217800-11222600	Transcr. at gene 5' and 3'	HepG2	liver
38	chr6:11217800-11229400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:11218000-11221800	Weak transcription	Fetal Stomach	stomach
40	chr6:11218400-11221000	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr6:11218400-11221200	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr6:11218400-11222000	Genic enhancers	Lung	lung
43	chr6:11218400-11224600	Weak transcription	Ovary	ovary
44	chr6:11218600-11221800	Weak transcription	Gastric	stomach
45	chr6:11218800-11221000	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr6:11219200-11221000	Strong transcription	Primary B cells from peripheral blood	blood
47	chr6:11219200-11221200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:11219200-11221800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr6:11219200-11223200	Weak transcription	Brain Substantia Nigra	brain
50	chr6:11219200-11224400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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