Variant report

Variant	rs6917551
Chromosome Location	chr6:11216447-11216448
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11209766..11214077-chr6:11214391..11221251,7	K562	blood:
2	chr6:11211001..11214077-chr6:11215727..11219130,4	K562	blood:
3	chr6:11213657..11217222-chr6:11219207..11223440,6	MCF-7	breast:
4	chr6:11216036..11217997-chr6:11412401..11415164,2	MCF-7	breast:
5	chr6:11215763..11222711-chr6:11227480..11234166,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2025677	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2025678	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4713247	0.92[EUR][1000 genomes]
rs6457107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs943007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11204200-11222400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:11205200-11217800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:11206400-11216600	Enhancers	Fetal Muscle Leg	muscle
4	chr6:11207200-11218600	Strong transcription	Primary B cells from cord blood	blood
5	chr6:11207600-11216800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:11207800-11218200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:11208000-11217200	Strong transcription	GM12878-XiMat	blood
8	chr6:11208200-11218600	Genic enhancers	HUVEC	blood vessel
9	chr6:11208600-11218200	Strong transcription	Primary B cells from peripheral blood	blood
10	chr6:11209400-11217200	Genic enhancers	Placenta Amnion	Placenta Amnion
11	chr6:11210000-11218000	Enhancers	Stomach Mucosa	stomach
12	chr6:11210200-11216800	Genic enhancers	Placenta	Placenta
13	chr6:11210200-11217200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
14	chr6:11211000-11216600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:11211000-11216600	Genic enhancers	Lung	lung
16	chr6:11211600-11218400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:11211600-11219000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:11211600-11222200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:11211600-11229200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:11211800-11219800	Enhancers	Left Ventricle	heart
21	chr6:11211800-11229200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:11212000-11217200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:11212000-11217400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:11212200-11217200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:11212200-11217400	Weak transcription	Dnd41	blood
26	chr6:11212200-11218800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:11212600-11217000	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:11212600-11221800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr6:11212600-11222400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr6:11212800-11216800	Genic enhancers	Rectal Mucosa Donor 31	rectum
31	chr6:11213000-11216600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:11213000-11217200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:11213000-11222400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr6:11213000-11223600	Enhancers	Fetal Lung	lung
35	chr6:11213200-11216600	Genic enhancers	Spleen	Spleen
36	chr6:11213400-11216800	Enhancers	Brain Hippocampus Middle	brain
37	chr6:11213600-11217000	Weak transcription	Hela-S3	cervix
38	chr6:11213600-11217200	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
39	chr6:11213800-11217200	Genic enhancers	A549	lung
40	chr6:11213800-11217600	Weak transcription	Liver	Liver
41	chr6:11213800-11219200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:11213800-11221800	Weak transcription	NHEK	skin
43	chr6:11213800-11222800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr6:11214000-11216800	Strong transcription	HSMM	muscle
45	chr6:11214000-11217000	Strong transcription	Primary T cells from cord blood	blood
46	chr6:11214000-11219000	Weak transcription	HMEC	breast
47	chr6:11214000-11222400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:11214200-11218200	Enhancers	Fetal Brain Male	brain
49	chr6:11214200-11218400	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr6:11214200-11220000	Enhancers	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links