Variant report
| Variant | rs2026985 |
|---|---|
| Chromosome Location | chr13:91894372-91894373 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:91893680..91897355-chr13:92007107..92011169,4 | K562 | blood: | |
| 2 | chr13:91893680..91896156-chr13:92009275..92010984,2 | K562 | blood: | |
| 3 | chr13:91887387..91891925-chr13:91893469..91896614,5 | K562 | blood: | |
| 4 | chr13:91892375..91894811-chr13:91902277..91905076,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs16945657 | 1.00[ASN][1000 genomes] |
| rs7358927 | 1.00[ASN][1000 genomes] |
| rs7358948 | 1.00[ASN][1000 genomes] |
| rs7358999 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7989029 | 1.00[ASN][1000 genomes] |
| rs9301712 | 1.00[ASN][1000 genomes] |
| rs9301716 | 1.00[ASN][1000 genomes] |
| rs9583894 | 1.00[ASN][1000 genomes] |
| rs9583899 | 1.00[ASN][1000 genomes] |
| rs9583903 | 1.00[ASN][1000 genomes] |
| rs9583904 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9589133 | 1.00[ASN][1000 genomes] |
| rs9589136 | 1.00[ASN][1000 genomes] |
| rs9589140 | 1.00[ASN][1000 genomes] |
| rs9589141 | 1.00[ASN][1000 genomes] |
| rs9589142 | 1.00[ASN][1000 genomes] |
| rs9589149 | 1.00[ASN][1000 genomes] |
| rs9589151 | 1.00[ASN][1000 genomes] |
| rs9589154 | 1.00[ASN][1000 genomes] |
| rs9589155 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9589156 | 1.00[ASN][1000 genomes] |
| rs9589157 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9589159 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9589161 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9589162 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9589164 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1042947 | chr13:91571040-92416897 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1946 gene(s) | inside rSNPs | diseases |
| 2 | nsv541871 | chr13:91571040-92416897 | Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1946 gene(s) | inside rSNPs | diseases |
| 3 | esv1803618 | chr13:91669587-92277699 | Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1945 gene(s) | inside rSNPs | diseases |
| 4 | nsv1050259 | chr13:91759549-92152078 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1944 gene(s) | inside rSNPs | diseases |
| 5 | nsv541872 | chr13:91759549-92152078 | Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1944 gene(s) | inside rSNPs | diseases |
| 6 | nsv832678 | chr13:91771619-91932241 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 7 | esv2756433 | chr13:91841599-91968099 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 8 | nsv832679 | chr13:91859467-92030220 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1943 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:91892000-91894400 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 2 | chr13:91894000-91897200 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 3 | chr13:91894200-91894400 | Active TSS | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 4 | chr13:91894200-91902600 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
