Variant report

Variant	rs16945657
Chromosome Location	chr13:91890606-91890607
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:91889138..91891419-chr13:92011620..92013937,2	K562	blood:
2	chr13:91887329..91890707-chr13:91908939..91913306,4	K562	blood:
3	chr13:91887387..91891925-chr13:91893469..91896614,5	K562	blood:
4	chr1:162473001..162475319-chr13:91889993..91891513,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10454517	1.00[JPT][hapmap]
rs1332221	1.00[JPT][hapmap]
rs16945595	1.00[JPT][hapmap]
rs16945760	1.00[JPT][hapmap]
rs2026985	1.00[ASN][1000 genomes]
rs4409955	0.83[AMR][1000 genomes]
rs7318410	1.00[JPT][hapmap]
rs7336155	1.00[JPT][hapmap]
rs7358927	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7358948	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7358999	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7989029	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7989392	1.00[JPT][hapmap]
rs9301712	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9301716	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9301723	1.00[JPT][hapmap]
rs9583894	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9583899	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9583903	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9583904	1.00[ASN][1000 genomes]
rs9589133	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589136	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589140	0.84[LWK][hapmap];0.88[MKK][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589141	1.00[ASN][1000 genomes]
rs9589142	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589149	1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.88[MKK][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589150	1.00[JPT][hapmap]
rs9589151	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589152	1.00[AMR][1000 genomes]
rs9589154	1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589155	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9589156	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589157	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9589159	1.00[ASN][1000 genomes]
rs9589161	1.00[ASN][1000 genomes]
rs9589162	1.00[ASN][1000 genomes]
rs9589164	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589173	1.00[JPT][hapmap]
rs987770	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
4	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
5	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
6	nsv832678	chr13:91771619-91932241	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2756325	chr13:91836410-91890606	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2756433	chr13:91841599-91968099	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv832679	chr13:91859467-92030220	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1943 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91889600-91891000	Enhancers	GM12878-XiMat	blood
2	chr13:91890600-91890800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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