Variant report

Variant	rs9583903
Chromosome Location	chr13:91896043-91896044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:91894505..91898195-chr13:91999710..92001323,4	K562	blood:
2	chr13:91893680..91897355-chr13:92007107..92011169,4	K562	blood:
3	chr13:91894505..91897383-chr13:91999710..92001323,3	K562	blood:
4	chr13:91893680..91896156-chr13:92009275..92010984,2	K562	blood:
5	chr13:91896009..91898114-chr13:91898215..91900869,2	K562	blood:
6	chr13:91887387..91891925-chr13:91893469..91896614,5	K562	blood:

Variant related genes	Relation type
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs16945657	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2026985	1.00[ASN][1000 genomes]
rs4409955	0.83[AMR][1000 genomes]
rs7358927	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7358948	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7358999	1.00[ASN][1000 genomes]
rs7989029	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9301712	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9301716	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9583894	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9583899	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9583904	1.00[ASN][1000 genomes]
rs9589133	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589136	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589140	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589141	1.00[ASN][1000 genomes]
rs9589142	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589149	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589151	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589152	1.00[AMR][1000 genomes]
rs9589154	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589155	1.00[ASN][1000 genomes]
rs9589156	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9589157	1.00[ASN][1000 genomes]
rs9589159	1.00[ASN][1000 genomes]
rs9589161	1.00[ASN][1000 genomes]
rs9589162	1.00[ASN][1000 genomes]
rs9589164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
4	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
5	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
6	nsv832678	chr13:91771619-91932241	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2756433	chr13:91841599-91968099	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv832679	chr13:91859467-92030220	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1943 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91894000-91897200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr13:91894200-91902600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:91895200-91896400	Enhancers	Placenta	Placenta
4	chr13:91895400-91898400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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