Variant report

Variant	rs2028132
Chromosome Location	chr2:142460138-142460139
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10190295	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10203762	0.83[AFR][1000 genomes]
rs11885368	0.81[EUR][1000 genomes]
rs13386614	0.88[AFR][1000 genomes]
rs13400579	0.81[EUR][1000 genomes]
rs13412600	0.81[EUR][1000 genomes]
rs13412704	0.81[EUR][1000 genomes]
rs16846899	0.81[EUR][1000 genomes]
rs1816607	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2028131	0.81[EUR][1000 genomes]
rs6724084	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6724139	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73963558	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7563507	0.87[AFR][1000 genomes]
rs7595634	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7604167	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142456800-142462800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr2:142458200-142461400	Enhancers	Fetal Stomach	stomach
3	chr2:142458400-142461200	Enhancers	Fetal Lung	lung
4	chr2:142458600-142460400	Enhancers	Colon Smooth Muscle	Colon
5	chr2:142459400-142460600	Enhancers	Stomach Smooth Muscle	stomach
6	chr2:142459800-142460600	Enhancers	Rectal Smooth Muscle	rectum
7	chr2:142460000-142463600	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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