Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10190295	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10195330	0.81[EUR][1000 genomes]
rs10203762	0.94[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10928119	0.82[EUR][1000 genomes]
rs11896157	0.82[EUR][1000 genomes]
rs12373690	0.81[EUR][1000 genomes]
rs12373842	0.82[EUR][1000 genomes]
rs12613378	0.82[EUR][1000 genomes]
rs12614785	0.82[EUR][1000 genomes]
rs12622890	0.82[EUR][1000 genomes]
rs13386614	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13390324	0.81[EUR][1000 genomes]
rs1437342	0.81[EUR][1000 genomes]
rs16846913	0.82[EUR][1000 genomes]
rs1816607	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2028132	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2164700	0.82[EUR][1000 genomes]
rs2196599	0.82[EUR][1000 genomes]
rs2381155	0.82[EUR][1000 genomes]
rs6724084	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6724139	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73963558	0.88[EUR][1000 genomes]
rs7563507	0.98[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7604167	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142453000-142458600	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:142455200-142457200	Enhancers	Liver	Liver
3	chr2:142455600-142459400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:142455800-142459800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr2:142456800-142462800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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