Variant report

Variant	rs7604167
Chromosome Location	chr2:142450948-142450949
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10190295	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10203762	0.89[AFR][1000 genomes]
rs11885368	0.82[EUR][1000 genomes]
rs11891104	0.81[EUR][1000 genomes]
rs13386614	0.93[AFR][1000 genomes]
rs13400579	0.82[EUR][1000 genomes]
rs13412600	0.82[EUR][1000 genomes]
rs13412704	0.82[EUR][1000 genomes]
rs16846899	0.82[EUR][1000 genomes]
rs1816607	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2028131	0.82[EUR][1000 genomes]
rs2028132	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6724084	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6724139	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73963558	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7563507	0.93[AFR][1000 genomes]
rs7595634	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv834394	chr2:142430225-142593264	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142450000-142451000	Bivalent Enhancer	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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