Variant report

Variant	rs2029386
Chromosome Location	chr4:169407947-169407948
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:169402796..169405049-chr4:169406654..169409364,2	MCF-7	breast:
2	chr4:169402399..169404230-chr4:169407666..169410467,2	MCF-7	breast:
3	chr4:169401971..169404408-chr4:169404593..169408456,4	K562	blood:
4	chr4:169407435..169409077-chr4:169412406..169414250,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10002308	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12331721	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13353710	0.94[CHB][hapmap];0.94[CHD][hapmap];0.83[ASN][1000 genomes]
rs2710831	0.94[ASN][1000 genomes]
rs2710832	0.94[ASN][1000 genomes]
rs28524000	0.94[ASN][1000 genomes]
rs28675009	0.94[ASN][1000 genomes]
rs55764504	0.94[ASN][1000 genomes]
rs9999142	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881379	chr4:169361897-169504099	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:169402400-169408000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:169402400-169408000	Weak transcription	Right Ventricle	heart
3	chr4:169402400-169408000	Enhancers	Hela-S3	cervix
4	chr4:169402400-169411800	Enhancers	HSMM	muscle
5	chr4:169402600-169408000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:169402600-169408000	Weak transcription	Psoas Muscle	Psoas
7	chr4:169402600-169408800	Weak transcription	Right Atrium	heart
8	chr4:169402600-169409200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:169402800-169408000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:169402800-169408000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr4:169402800-169408000	Weak transcription	Liver	Liver
12	chr4:169402800-169408000	Weak transcription	Stomach Mucosa	stomach
13	chr4:169402800-169409200	Weak transcription	Thymus	Thymus
14	chr4:169402800-169410000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:169403000-169408000	Weak transcription	Fetal Intestine Large	intestine
16	chr4:169403200-169408000	Weak transcription	Fetal Intestine Small	intestine
17	chr4:169403200-169409800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:169403200-169410000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr4:169403400-169408000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:169403400-169408000	Weak transcription	Left Ventricle	heart
21	chr4:169403400-169408000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:169403400-169408000	Weak transcription	HUVEC	blood vessel
23	chr4:169403400-169408200	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:169403400-169408600	Enhancers	HSMMtube	muscle
25	chr4:169403800-169409800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr4:169404200-169408000	Enhancers	NHEK	skin
27	chr4:169404800-169408000	Weak transcription	Fetal Thymus	thymus
28	chr4:169405000-169408800	Weak transcription	Primary T cells from cord blood	blood
29	chr4:169405200-169409600	Weak transcription	Dnd41	blood
30	chr4:169405800-169408000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:169405800-169408000	Weak transcription	Placenta	Placenta
32	chr4:169406200-169408000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:169406400-169408000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:169406400-169408200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr4:169406600-169408000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr4:169407000-169408000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr4:169407000-169408000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:169407000-169408000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:169407000-169408000	Weak transcription	Fetal Heart	heart
40	chr4:169407600-169408000	Enhancers	NH-A	brain
41	chr4:169407600-169408000	Enhancers	NHLF	lung
42	chr4:169407600-169409200	Enhancers	Osteobl	bone
43	chr4:169407600-169409400	Enhancers	NHDF-Ad	bronchial
44	chr4:169407800-169408200	Flanking Active TSS	A549	lung
45	chr4:169407800-169408800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr4:169407800-169409000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr4:169407800-169409400	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr4:169407800-169409400	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr4:169407800-169409600	Enhancers	HMEC	breast
50	chr4:169407800-169410200	Enhancers	Placenta Amnion	Placenta Amnion

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