Variant report

Variant	rs2710831
Chromosome Location	chr4:169408821-169408822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:169408639..169409215-chr4:169840898..169841412,2	MCF-7	breast:
2	chr4:169408345..169409503-chr4:169612556..169613529,4	MCF-7	breast:
3	chr4:169408704..169409541-chr4:169612591..169613363,2	MCF-7	breast:
4	chr4:169402796..169405049-chr4:169406654..169409364,2	MCF-7	breast:
5	chr4:169402399..169404230-chr4:169407666..169410467,2	MCF-7	breast:
6	chr4:169408457..169409382-chr4:169422153..169422788,6	MCF-7	breast:
7	chr4:169408554..169409246-chr4:169422153..169422774,4	MCF-7	breast:
8	chr4:169408632..169409484-chr4:169422246..169423095,6	MCF-7	breast:
9	chr4:169407435..169409077-chr4:169412406..169414250,2	K562	blood:

No data

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10002308	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12331721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13353710	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17054232	0.81[AMR][1000 genomes]
rs2029386	0.94[ASN][1000 genomes]
rs2710832	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28524000	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675009	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55764504	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9999142	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881379	chr4:169361897-169504099	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:169402400-169411800	Enhancers	HSMM	muscle
2	chr4:169402600-169409200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:169402800-169409200	Weak transcription	Thymus	Thymus
4	chr4:169402800-169410000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:169403200-169409800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:169403200-169410000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:169403800-169409800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:169405200-169409600	Weak transcription	Dnd41	blood
9	chr4:169407600-169409200	Enhancers	Osteobl	bone
10	chr4:169407600-169409400	Enhancers	NHDF-Ad	bronchial
11	chr4:169407800-169409000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:169407800-169409400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr4:169407800-169409400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr4:169407800-169409600	Enhancers	HMEC	breast
15	chr4:169407800-169410200	Enhancers	Placenta Amnion	Placenta Amnion
16	chr4:169408000-169409000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
17	chr4:169408000-169409000	Enhancers	Esophagus	oesophagus
18	chr4:169408000-169409200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:169408000-169409200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:169408000-169409200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:169408000-169409200	Enhancers	Left Ventricle	heart
22	chr4:169408000-169409200	Flanking Active TSS	NHEK	skin
23	chr4:169408000-169409400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:169408000-169409400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:169408000-169409400	Enhancers	Fetal Intestine Large	intestine
26	chr4:169408000-169409400	Enhancers	Fetal Intestine Small	intestine
27	chr4:169408000-169409400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr4:169408000-169409400	Enhancers	Stomach Mucosa	stomach
29	chr4:169408000-169409400	Flanking Active TSS	Hela-S3	cervix
30	chr4:169408000-169409600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:169408000-169409800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:169408000-169410200	Enhancers	Fetal Heart	heart
33	chr4:169408000-169410400	Enhancers	Placenta	Placenta
34	chr4:169408000-169410600	Enhancers	Fetal Thymus	thymus
35	chr4:169408000-169410800	Enhancers	Liver	Liver
36	chr4:169408200-169410600	Enhancers	Fetal Muscle Leg	muscle
37	chr4:169408200-169412200	Active TSS	A549	lung
38	chr4:169408400-169409800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:169408600-169409200	Enhancers	NHLF	lung
40	chr4:169408600-169409400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr4:169408600-169409400	Flanking Active TSS	HSMMtube	muscle
42	chr4:169408600-169409800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr4:169408600-169410000	Enhancers	Psoas Muscle	Psoas
44	chr4:169408800-169409000	Enhancers	NH-A	brain
45	chr4:169408800-169409600	Enhancers	Right Atrium	heart
46	chr4:169408800-169410000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr4:169408800-169410000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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