Variant report

Variant	rs28524000
Chromosome Location	chr4:169408558-169408559
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:169408345..169409503-chr4:169612556..169613529,4	MCF-7	breast:
2	chr4:169402796..169405049-chr4:169406654..169409364,2	MCF-7	breast:
3	chr4:169402399..169404230-chr4:169407666..169410467,2	MCF-7	breast:
4	chr4:169408457..169409382-chr4:169422153..169422788,6	MCF-7	breast:
5	chr4:169408554..169409246-chr4:169422153..169422774,4	MCF-7	breast:
6	chr4:169407435..169409077-chr4:169412406..169414250,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10002308	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12331721	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13353710	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17054232	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2029386	0.94[ASN][1000 genomes]
rs2710831	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2710832	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28675009	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55764504	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9999142	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881379	chr4:169361897-169504099	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:169402400-169411800	Enhancers	HSMM	muscle
2	chr4:169402600-169408800	Weak transcription	Right Atrium	heart
3	chr4:169402600-169409200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:169402800-169409200	Weak transcription	Thymus	Thymus
5	chr4:169402800-169410000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:169403200-169409800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:169403200-169410000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:169403400-169408600	Enhancers	HSMMtube	muscle
9	chr4:169403800-169409800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr4:169405000-169408800	Weak transcription	Primary T cells from cord blood	blood
11	chr4:169405200-169409600	Weak transcription	Dnd41	blood
12	chr4:169407600-169409200	Enhancers	Osteobl	bone
13	chr4:169407600-169409400	Enhancers	NHDF-Ad	bronchial
14	chr4:169407800-169408800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr4:169407800-169409000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:169407800-169409400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr4:169407800-169409400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr4:169407800-169409600	Enhancers	HMEC	breast
19	chr4:169407800-169410200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr4:169408000-169408600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:169408000-169408600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:169408000-169408800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:169408000-169408800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:169408000-169408800	Enhancers	HUVEC	blood vessel
25	chr4:169408000-169408800	Flanking Active TSS	NH-A	brain
26	chr4:169408000-169409000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
27	chr4:169408000-169409000	Enhancers	Esophagus	oesophagus
28	chr4:169408000-169409200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:169408000-169409200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:169408000-169409200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:169408000-169409200	Enhancers	Left Ventricle	heart
32	chr4:169408000-169409200	Flanking Active TSS	NHEK	skin
33	chr4:169408000-169409400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr4:169408000-169409400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:169408000-169409400	Enhancers	Fetal Intestine Large	intestine
36	chr4:169408000-169409400	Enhancers	Fetal Intestine Small	intestine
37	chr4:169408000-169409400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr4:169408000-169409400	Enhancers	Stomach Mucosa	stomach
39	chr4:169408000-169409400	Flanking Active TSS	Hela-S3	cervix
40	chr4:169408000-169409600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:169408000-169409800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr4:169408000-169410200	Enhancers	Fetal Heart	heart
43	chr4:169408000-169410400	Enhancers	Placenta	Placenta
44	chr4:169408000-169410600	Enhancers	Fetal Thymus	thymus
45	chr4:169408000-169410800	Enhancers	Liver	Liver
46	chr4:169408200-169408600	Weak transcription	Psoas Muscle	Psoas
47	chr4:169408200-169408800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:169408200-169410600	Enhancers	Fetal Muscle Leg	muscle
49	chr4:169408200-169412200	Active TSS	A549	lung
50	chr4:169408400-169408600	Flanking Active TSS	NHLF	lung

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