Variant report

Variant	rs2030926
Chromosome Location	chr6:114067127-114067128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2498741	0.88[ASN][1000 genomes]
rs2498742	0.88[ASN][1000 genomes]
rs773678	0.82[ASN][1000 genomes]
rs773680	0.82[ASN][1000 genomes]
rs7751937	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7756389	0.85[ASN][1000 genomes]
rs967690	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021774	chr6:114063971-114407280	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv538422	chr6:114063971-114407280	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2030926	LOC285758	Cis_1M	lymphoblastoid	RTeQTL
rs2030926	FAM26F	cis	parietal	SCAN
rs2030926	MARCKS	cis	lymphoblastoid	seeQTL
rs2030926	NT5DC1	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114065000-114067800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:114065800-114067200	Enhancers	Psoas Muscle	Psoas
3	chr6:114065800-114067200	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr6:114066000-114067200	Enhancers	Colon Smooth Muscle	Colon
5	chr6:114066000-114067200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:114066200-114067200	Enhancers	Fetal Heart	heart
7	chr6:114066400-114071000	Weak transcription	HepG2	liver
8	chr6:114066800-114067400	Enhancers	Placenta	Placenta
9	chr6:114066800-114071000	Weak transcription	Adipose Nuclei	Adipose
10	chr6:114067000-114075800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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