Variant report

Variant	rs2498742
Chromosome Location	chr6:114054471-114054472
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:114048463..114050659-chr6:114053494..114056179,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1899788	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2030926	0.88[ASN][1000 genomes]
rs2498741	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695460	0.86[ASN][1000 genomes]
rs6908514	0.87[ASN][1000 genomes]
rs6935214	0.82[ASN][1000 genomes]
rs773678	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs773680	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7751937	0.88[ASN][1000 genomes]
rs7756389	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs930563	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9387170	0.88[ASN][1000 genomes]
rs9400661	0.86[ASN][1000 genomes]
rs967690	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114052200-114055000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:114052200-114055000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:114053400-114054600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:114053400-114054800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:114053600-114054600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:114053600-114054600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:114053600-114055000	Enhancers	NHDF-Ad	bronchial
8	chr6:114053600-114056200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:114053800-114054800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:114054000-114056000	Weak transcription	Right Atrium	heart
11	chr6:114054000-114056200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:114054000-114063200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:114054200-114054600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:114054200-114054600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:114054200-114054800	Enhancers	Brain Hippocampus Middle	brain
16	chr6:114054200-114055000	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:114054200-114056000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:114054200-114056000	Weak transcription	Psoas Muscle	Psoas
19	chr6:114054200-114056000	Weak transcription	NH-A	brain
20	chr6:114054200-114056000	Weak transcription	Osteobl	bone
21	chr6:114054200-114056200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:114054200-114056200	Weak transcription	Stomach Mucosa	stomach
23	chr6:114054200-114058200	Weak transcription	HepG2	liver
24	chr6:114054400-114054600	Bivalent Enhancer	Fetal Heart	heart
25	chr6:114054400-114056000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:114054400-114056200	Weak transcription	Brain Anterior Caudate	brain
27	chr6:114054400-114056200	Weak transcription	HSMM	muscle
28	chr6:114054400-114056400	Weak transcription	HSMMtube	muscle

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