Variant report

Variant	rs930563
Chromosome Location	chr6:114031275-114031276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1899788	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2498741	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2498742	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2695460	0.92[ASN][1000 genomes]
rs6908514	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs773678	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs773680	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9387170	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9400661	0.92[ASN][1000 genomes]
rs967690	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv981079	chr6:114021110-114039103	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	esv3334553	chr6:114031216-114031379	Enhancers Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:114028800-114032200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:114029200-114031400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:114030200-114031400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:114030200-114040000	Weak transcription	Stomach Mucosa	stomach
5	chr6:114031000-114031600	Enhancers	Fetal Intestine Large	intestine
6	chr6:114031000-114031800	Enhancers	Fetal Intestine Small	intestine
7	chr6:114031000-114032000	Enhancers	Fetal Brain Male	brain
8	chr6:114031200-114031600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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