Variant report

Variant	rs2033875
Chromosome Location	chr2:12095792-12095793
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1004441	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10210362	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13012835	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1985419	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2016806	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2033874	0.92[ASN][1000 genomes]
rs2033876	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119145	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2248650	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2249223	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2255293	0.87[ASN][1000 genomes]
rs2581066	0.87[ASN][1000 genomes]
rs2581069	0.98[ASN][1000 genomes]
rs2581070	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2581075	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2581077	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2581078	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2581080	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs972874	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12094400-12096600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:12094800-12095800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:12095000-12096400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:12095200-12095800	Enhancers	NHDF-Ad	bronchial
5	chr2:12095200-12095800	Enhancers	NHEK	skin
6	chr2:12095200-12096800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:12095200-12097600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:12095400-12095800	Enhancers	HMEC	breast
9	chr2:12095400-12096000	Enhancers	Osteobl	bone
10	chr2:12095400-12096200	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr2:12095600-12096000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:12095600-12096000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:12095600-12096000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr2:12095600-12096200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:12095600-12096200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr2:12095600-12096200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
17	chr2:12095600-12096400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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