Variant report

Variant	rs2581070
Chromosome Location	chr2:12102054-12102055
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1004441	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10210362	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13012835	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1985419	0.91[ASN][1000 genomes]
rs2016806	0.89[ASN][1000 genomes]
rs2033874	0.90[ASN][1000 genomes]
rs2033875	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2033876	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2119145	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2248650	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2249223	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2255293	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2581066	0.87[ASN][1000 genomes]
rs2581069	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2581075	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2581077	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2581078	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2581080	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs972874	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2581070	KCNF1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12096400-12104200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:12101800-12104400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:12102000-12102600	Weak transcription	Left Ventricle	heart
4	chr2:12102000-12105800	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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