Variant report

Variant	rs2033876
Chromosome Location	chr2:12095807-12095808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:12089447..12091236-chr2:12095182..12096946,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1004441	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10210362	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13012835	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1985419	0.95[ASN][1000 genomes]
rs2016806	0.93[ASN][1000 genomes]
rs2033874	0.93[ASN][1000 genomes]
rs2033875	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119145	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2248650	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2249223	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2255293	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2581066	0.88[ASN][1000 genomes]
rs2581069	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2581070	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2581075	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2581077	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2581078	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2581080	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs972874	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12094400-12096600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:12095000-12096400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:12095200-12096800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:12095200-12097600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:12095400-12096000	Enhancers	Osteobl	bone
6	chr2:12095400-12096200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr2:12095600-12096000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:12095600-12096000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:12095600-12096000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr2:12095600-12096200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr2:12095600-12096200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr2:12095600-12096200	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
13	chr2:12095600-12096400	Enhancers	HSMM	muscle
14	chr2:12095800-12096000	Enhancers	Fetal Lung	lung
15	chr2:12095800-12096000	Enhancers	Psoas Muscle	Psoas
16	chr2:12095800-12096000	Flanking Active TSS	NHDF-Ad	bronchial
17	chr2:12095800-12096200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:12095800-12096200	Enhancers	Brain Germinal Matrix	brain
19	chr2:12095800-12096600	Enhancers	Fetal Brain Male	brain
20	chr2:12095800-12099600	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links