Variant report
| Variant | rs2042097 |
|---|---|
| Chromosome Location | chr1:197471350-197471351 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10801605 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs10922215 | 0.84[CHB][hapmap];1.00[JPT][hapmap] |
| rs10922216 | 0.87[JPT][hapmap] |
| rs10922221 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs10922223 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs10922225 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
| rs10922247 | 0.97[ASN][1000 genomes] |
| rs10922249 | 0.82[ASN][1000 genomes] |
| rs11583319 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11799515 | 0.84[CHB][hapmap];1.00[JPT][hapmap] |
| rs11802794 | 0.84[CHB][hapmap];1.00[JPT][hapmap] |
| rs12117045 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs12118913 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12141028 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs12142127 | 1.00[ASN][1000 genomes] |
| rs17621130 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1775452 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs1923759 | 0.85[YRI][hapmap] |
| rs2476020 | 0.84[CHB][hapmap];0.86[JPT][hapmap] |
| rs2477077 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs2488389 | 1.00[CHB][hapmap];0.93[JPT][hapmap] |
| rs2494268 | 0.87[JPT][hapmap] |
| rs2759662 | 0.84[CHB][hapmap];0.86[JPT][hapmap] |
| rs2759663 | 0.87[JPT][hapmap] |
| rs2821102 | 0.87[JPT][hapmap] |
| rs2821121 | 0.84[CHB][hapmap];0.86[JPT][hapmap] |
| rs35624964 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs67236816 | 0.88[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7522325 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014039 | chr1:197311285-197529212 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv521647 | chr1:197464448-197529218 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv873074 | chr1:197464448-197698103 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv873075 | chr1:197464448-197714851 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:197467200-197499000 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
