Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80133246..80135427-chr16:80136846..80139540,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11150245	0.82[ASN][1000 genomes]
rs1115722	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11648628	0.81[AMR][1000 genomes]
rs12596092	0.80[ASN][1000 genomes]
rs1478505	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1478506	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2199645	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4354957	0.83[EUR][1000 genomes]
rs4500745	0.83[EUR][1000 genomes]
rs4889084	0.83[EUR][1000 genomes]
rs4889086	0.83[EUR][1000 genomes]
rs4889090	0.83[EUR][1000 genomes]
rs4889092	0.85[EUR][1000 genomes]
rs4889093	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4889100	0.82[ASN][1000 genomes]
rs6564727	0.84[EUR][1000 genomes]
rs6564728	0.83[EUR][1000 genomes]
rs6564729	0.85[EUR][1000 genomes]
rs6564730	0.85[EUR][1000 genomes]
rs7185080	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7192544	0.83[EUR][1000 genomes]
rs7192753	0.84[EUR][1000 genomes]
rs8059251	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80127000-80137200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:80133800-80134600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr16:80134000-80134400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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