Variant report

Variant	rs7185080
Chromosome Location	chr16:80119504-80119505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80116624..80119575-chr16:80356454..80358256,2	MCF-7	breast:
2	chr16:80061252..80063823-chr16:80117741..80119543,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11150245	0.88[ASN][1000 genomes]
rs1115722	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11645922	0.83[EUR][1000 genomes]
rs12596092	0.86[ASN][1000 genomes]
rs12921255	0.83[EUR][1000 genomes]
rs13333795	0.85[EUR][1000 genomes]
rs1382387	0.80[CHB][hapmap]
rs1478505	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1478506	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2042362	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2199645	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4354957	1.00[CEU][hapmap];0.84[CHB][hapmap];0.90[EUR][1000 genomes]
rs4365299	0.86[CEU][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes]
rs4402582	0.85[EUR][1000 genomes]
rs4407073	0.82[CEU][hapmap]
rs4500741	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs4500745	0.90[EUR][1000 genomes]
rs4888067	0.82[EUR][1000 genomes]
rs4889067	0.86[CEU][hapmap];0.81[TSI][hapmap];0.81[EUR][1000 genomes]
rs4889068	0.86[CEU][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]
rs4889084	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4889086	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4889090	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4889092	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4889093	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4889100	0.88[ASN][1000 genomes]
rs6564727	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6564728	0.95[CEU][hapmap];0.85[CHB][hapmap];0.93[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6564729	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6564730	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7192544	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7192753	0.95[CEU][hapmap];0.96[GIH][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs8050142	1.00[CEU][hapmap];0.93[GIH][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs8050160	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs8059251	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9937844	0.86[CEU][hapmap];0.88[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80118400-80119800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:80118400-80119800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr16:80119200-80125000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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