Variant report

Variant	rs2047359
Chromosome Location	chr4:101898276-101898277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1390935	0.84[EUR][1000 genomes]
rs1908808	0.81[EUR][1000 genomes]
rs2132693	0.81[EUR][1000 genomes]
rs2645375	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2645381	0.83[EUR][1000 genomes]
rs2850613	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2851047	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101896600-101898600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:101896800-101898600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:101896800-101901800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:101896800-101906000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:101896800-101906400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:101897000-101902600	Weak transcription	Right Atrium	heart
7	chr4:101897000-101902800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:101897200-101902800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:101897200-101906200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:101897400-101903600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:101898000-101898800	Enhancers	Colon Smooth Muscle	Colon
12	chr4:101898200-101899800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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