Variant report

Variant	rs2850613
Chromosome Location	chr4:101899716-101899717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1390935	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1532443	0.81[EUR][1000 genomes]
rs1876267	1.00[ASN][1000 genomes]
rs1880942	1.00[ASN][1000 genomes]
rs1908808	0.86[EUR][1000 genomes]
rs2037772	1.00[ASN][1000 genomes]
rs2047359	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2132693	0.86[EUR][1000 genomes]
rs2645375	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645381	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2695204	1.00[ASN][1000 genomes]
rs2732498	1.00[ASN][1000 genomes]
rs2732504	1.00[ASN][1000 genomes]
rs2732507	0.81[EUR][1000 genomes]
rs2732508	0.81[EUR][1000 genomes]
rs2732513	0.81[EUR][1000 genomes]
rs2850609	0.81[EUR][1000 genomes]
rs2850610	0.81[EUR][1000 genomes]
rs2850612	0.85[EUR][1000 genomes]
rs2851046	0.81[EUR][1000 genomes]
rs2851047	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851048	0.81[EUR][1000 genomes]
rs2851056	0.81[EUR][1000 genomes]
rs2851063	1.00[ASN][1000 genomes]
rs2957293	1.00[ASN][1000 genomes]
rs3017730	1.00[ASN][1000 genomes]
rs6845625	1.00[ASN][1000 genomes]
rs72681007	1.00[ASN][1000 genomes]
rs72681042	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101896800-101901800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:101896800-101906000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:101896800-101906400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:101897000-101902600	Weak transcription	Right Atrium	heart
5	chr4:101897000-101902800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:101897200-101902800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:101897200-101906200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr4:101897400-101903600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:101898200-101899800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:101898400-101899800	Enhancers	Liver	Liver
11	chr4:101898400-101899800	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr4:101898600-101899800	Enhancers	Adipose Nuclei	Adipose
13	chr4:101898800-101902800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:101898800-101907600	Weak transcription	Left Ventricle	heart
15	chr4:101899000-101899800	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr4:101899000-101899800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr4:101899200-101901200	Enhancers	Colon Smooth Muscle	Colon
18	chr4:101899200-101901800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:101899400-101900400	Weak transcription	Fetal Stomach	stomach
20	chr4:101899400-101900800	Weak transcription	Ovary	ovary
21	chr4:101899400-101902000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr4:101899400-101902600	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr4:101899400-101902600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:101899400-101902600	Weak transcription	HMEC	breast
25	chr4:101899600-101900200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:101899600-101902600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links