Variant report

Variant	rs72681042
Chromosome Location	chr4:102024696-102024697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:102022887..102025645-chr4:102079207..102081284,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138814	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1390935	1.00[ASN][1000 genomes]
rs1876267	1.00[ASN][1000 genomes]
rs1880942	1.00[ASN][1000 genomes]
rs2037772	1.00[ASN][1000 genomes]
rs2645375	1.00[ASN][1000 genomes]
rs2645381	1.00[ASN][1000 genomes]
rs2695204	1.00[ASN][1000 genomes]
rs2732498	1.00[ASN][1000 genomes]
rs2732504	1.00[ASN][1000 genomes]
rs2850613	1.00[ASN][1000 genomes]
rs2851047	1.00[ASN][1000 genomes]
rs2851063	1.00[ASN][1000 genomes]
rs2957293	1.00[ASN][1000 genomes]
rs3017730	1.00[ASN][1000 genomes]
rs34986310	1.00[ASN][1000 genomes]
rs6845625	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72681007	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv879669	chr4:101989816-102040091	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879670	chr4:101989816-102043610	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879671	chr4:101989816-102048076	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879672	chr4:101989816-102058842	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv879673	chr4:102002123-102043610	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv879674	chr4:102002123-102048076	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
9	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
11	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
12	nsv879675	chr4:102009827-102043610	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:101981800-102025000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr4:101993000-102031600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:101994800-102029800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:101997800-102034600	Weak transcription	HepG2	liver
6	chr4:101999600-102025200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:102000800-102032400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr4:102002800-102030600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr4:102012200-102024800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:102015400-102033000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:102019800-102029200	Weak transcription	Liver	Liver
12	chr4:102020200-102027800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:102020400-102027000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:102020600-102025600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr4:102022400-102025600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr4:102022400-102026200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:102022800-102026200	Enhancers	Brain Hippocampus Middle	brain
18	chr4:102022800-102026200	Enhancers	HUVEC	blood vessel
19	chr4:102023000-102025200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr4:102023000-102025600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:102023000-102026200	Enhancers	NHLF	lung
22	chr4:102023000-102026200	Enhancers	Osteobl	bone
23	chr4:102023000-102026400	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr4:102023200-102025200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr4:102023200-102025200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:102023200-102025200	Enhancers	NHDF-Ad	bronchial
27	chr4:102023200-102025400	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr4:102023200-102025400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr4:102023200-102025600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr4:102023200-102025600	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr4:102023200-102025800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr4:102023200-102025800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:102023200-102025800	Enhancers	Colon Smooth Muscle	Colon
34	chr4:102023200-102026200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:102023200-102026200	Enhancers	A549	lung
36	chr4:102023200-102026200	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr4:102023400-102024800	Enhancers	H1 Cell Line	embryonic stem cell
38	chr4:102023400-102025400	Enhancers	Brain Germinal Matrix	brain
39	chr4:102023400-102025400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr4:102023400-102025600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr4:102023400-102025600	Enhancers	Fetal Lung	lung
42	chr4:102023400-102025600	Enhancers	HSMM	muscle
43	chr4:102023400-102025800	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr4:102023400-102026200	Enhancers	Primary hematopoietic stem cells	blood
45	chr4:102023400-102026200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:102023600-102025000	Enhancers	NH-A	brain
47	chr4:102023600-102025200	Enhancers	HSMMtube	muscle
48	chr4:102023600-102025400	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr4:102023600-102025400	Enhancers	Fetal Muscle Leg	muscle
50	chr4:102023600-102025800	Enhancers	Fetal Thymus	thymus

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