Variant report

Variant	rs3017730
Chromosome Location	chr4:101954833-101954834
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101945503..101948247-chr4:101953002..101956027,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1390935	1.00[ASN][1000 genomes]
rs1876267	1.00[ASN][1000 genomes]
rs1880942	0.96[CEU][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2037772	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645375	1.00[ASN][1000 genomes]
rs2645381	1.00[ASN][1000 genomes]
rs2695204	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732498	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2732504	1.00[ASN][1000 genomes]
rs2850613	1.00[ASN][1000 genomes]
rs2851047	1.00[ASN][1000 genomes]
rs2851063	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2957293	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845625	1.00[ASN][1000 genomes]
rs72681007	1.00[ASN][1000 genomes]
rs72681042	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101931200-101958000	Weak transcription	Ovary	ovary
2	chr4:101936200-101967800	Weak transcription	Fetal Kidney	kidney
3	chr4:101940800-101958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:101941000-101960200	Weak transcription	Colonic Mucosa	Colon
5	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
6	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
8	chr4:101941600-101959400	Weak transcription	HepG2	liver
9	chr4:101941800-101959200	Weak transcription	Left Ventricle	heart
10	chr4:101942000-101970200	Weak transcription	Brain Hippocampus Middle	brain
11	chr4:101942400-101960200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:101942400-101971400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr4:101942600-101966800	Weak transcription	Gastric	stomach
14	chr4:101942600-102003200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:101942600-102024400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:101942800-101959600	Weak transcription	Lung	lung
17	chr4:101943000-101959000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:101943000-101961800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:101943200-101959200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr4:101943200-101967400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:101943200-101967400	Weak transcription	Spleen	Spleen
22	chr4:101943400-101959000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr4:101943400-101964200	Weak transcription	Colon Smooth Muscle	Colon
24	chr4:101943400-101967200	Weak transcription	Fetal Brain Male	brain
25	chr4:101943600-101958800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:101943800-101958200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr4:101943800-101958800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr4:101943800-101960800	Weak transcription	Esophagus	oesophagus
29	chr4:101943800-102023400	Weak transcription	Fetal Lung	lung
30	chr4:101944000-101958800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:101944000-101959000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr4:101944000-101962000	Weak transcription	A549	lung
33	chr4:101944000-101964600	Weak transcription	NHLF	lung
34	chr4:101944400-101959200	Weak transcription	NHDF-Ad	bronchial
35	chr4:101944400-101968400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:101944400-101981200	Weak transcription	Pancreas	Pancrea
37	chr4:101944400-102000200	Weak transcription	Fetal Stomach	stomach
38	chr4:101945400-101961000	Weak transcription	Fetal Brain Female	brain
39	chr4:101945400-101961600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr4:101945600-101970800	Weak transcription	Brain Cingulate Gyrus	brain
41	chr4:101945800-101960400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:101945800-101970800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr4:101947600-101955200	Weak transcription	Thymus	Thymus
44	chr4:101947600-101958000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:101947800-101958200	Weak transcription	HMEC	breast
46	chr4:101947800-101959200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:101947800-102012600	Weak transcription	Fetal Muscle Leg	muscle
48	chr4:101948000-101956800	Weak transcription	NHEK	skin
49	chr4:101948000-101958600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr4:101948200-101960000	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links