Variant report

Variant	rs1876267
Chromosome Location	chr4:102029501-102029502
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:70082527..70083460-chr4:102029317..102030043,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000127325	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1390935	1.00[ASN][1000 genomes]
rs1880942	1.00[ASN][1000 genomes]
rs2037772	1.00[ASN][1000 genomes]
rs2645375	1.00[ASN][1000 genomes]
rs2645381	1.00[ASN][1000 genomes]
rs2695204	1.00[ASN][1000 genomes]
rs2732498	1.00[ASN][1000 genomes]
rs2732504	0.85[MEX][hapmap];1.00[ASN][1000 genomes]
rs2850613	1.00[ASN][1000 genomes]
rs2851047	1.00[ASN][1000 genomes]
rs2851063	1.00[ASN][1000 genomes]
rs2957293	1.00[ASN][1000 genomes]
rs3017730	1.00[ASN][1000 genomes]
rs34986310	1.00[ASN][1000 genomes]
rs6845625	1.00[ASN][1000 genomes]
rs72681007	1.00[ASN][1000 genomes]
rs72681042	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv879669	chr4:101989816-102040091	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879670	chr4:101989816-102043610	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879671	chr4:101989816-102048076	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879672	chr4:101989816-102058842	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv879673	chr4:102002123-102043610	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv879674	chr4:102002123-102048076	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv999741	chr4:102009017-102454115	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
9	nsv537199	chr4:102009017-102454115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1004766	chr4:102009017-102713765	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
11	nsv537200	chr4:102009017-102713765	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
12	nsv879675	chr4:102009827-102043610	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:101993000-102031600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:101994800-102029800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:101997800-102034600	Weak transcription	HepG2	liver
5	chr4:102000800-102032400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:102002800-102030600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:102015400-102033000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:102023800-102031600	Weak transcription	Fetal Stomach	stomach
9	chr4:102024000-102035600	Weak transcription	HMEC	breast
10	chr4:102024600-102032400	Weak transcription	Spleen	Spleen
11	chr4:102024800-102036200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr4:102025000-102031200	Weak transcription	Ovary	ovary
13	chr4:102025000-102036000	Weak transcription	Gastric	stomach
14	chr4:102025000-102036000	Weak transcription	NHEK	skin
15	chr4:102025000-102036200	Weak transcription	Pancreas	Pancrea
16	chr4:102025000-102036400	Weak transcription	NH-A	brain
17	chr4:102025000-102048200	Weak transcription	Left Ventricle	heart
18	chr4:102025200-102035600	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:102025400-102035600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:102025400-102036400	Weak transcription	Right Atrium	heart
21	chr4:102025600-102029600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr4:102025600-102030800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:102025600-102034400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:102025600-102036000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr4:102025600-102036000	Weak transcription	Fetal Lung	lung
26	chr4:102025600-102049200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:102025800-102031800	Weak transcription	Psoas Muscle	Psoas
28	chr4:102025800-102035200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:102025800-102036000	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:102025800-102036000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr4:102025800-102036000	Weak transcription	Small Intestine	intestine
32	chr4:102025800-102036200	Weak transcription	Adipose Nuclei	Adipose
33	chr4:102025800-102036200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr4:102025800-102036200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:102026000-102030600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr4:102026000-102031800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr4:102026000-102034800	Weak transcription	Brain Angular Gyrus	brain
38	chr4:102026000-102035600	Weak transcription	Brain Substantia Nigra	brain
39	chr4:102026000-102046400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr4:102026200-102031600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr4:102026200-102032400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr4:102026200-102032400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr4:102026200-102034000	Weak transcription	NHLF	lung
44	chr4:102026200-102035000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:102026200-102036000	Weak transcription	NHDF-Ad	bronchial
46	chr4:102026200-102036200	Weak transcription	Osteobl	bone
47	chr4:102026200-102068600	Weak transcription	Primary T cells from cord blood	blood
48	chr4:102026400-102046000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr4:102027000-102030400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr4:102027200-102029600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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