Variant report
| Variant | rs2851047 |
|---|---|
| Chromosome Location | chr4:101921581-101921582 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1390935 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1532443 | 0.87[EUR][1000 genomes] |
| rs1876267 | 1.00[ASN][1000 genomes] |
| rs1880942 | 1.00[ASN][1000 genomes] |
| rs1908808 | 0.82[EUR][1000 genomes] |
| rs2037772 | 1.00[ASN][1000 genomes] |
| rs2047359 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2132693 | 0.82[EUR][1000 genomes] |
| rs2645375 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2645381 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2695204 | 1.00[ASN][1000 genomes] |
| rs2732498 | 1.00[ASN][1000 genomes] |
| rs2732504 | 1.00[ASN][1000 genomes] |
| rs2732507 | 0.87[EUR][1000 genomes] |
| rs2732508 | 0.87[EUR][1000 genomes] |
| rs2732513 | 0.87[EUR][1000 genomes] |
| rs2850609 | 0.87[EUR][1000 genomes] |
| rs2850610 | 0.87[EUR][1000 genomes] |
| rs2850612 | 0.83[EUR][1000 genomes] |
| rs2850613 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2851041 | 0.86[EUR][1000 genomes] |
| rs2851046 | 0.87[EUR][1000 genomes] |
| rs2851048 | 0.87[EUR][1000 genomes] |
| rs2851056 | 0.87[EUR][1000 genomes] |
| rs2851063 | 1.00[ASN][1000 genomes] |
| rs2957293 | 1.00[ASN][1000 genomes] |
| rs3017730 | 1.00[ASN][1000 genomes] |
| rs6845625 | 1.00[ASN][1000 genomes] |
| rs72681007 | 1.00[ASN][1000 genomes] |
| rs72681042 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931418 | chr4:101500167-102443207 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:101914800-101924600 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 2 | chr4:101919200-101924400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
