Variant report

Variant	rs2048660
Chromosome Location	chr15:33536859-33536860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr15:33536575-33537000	HEK293-T-REx	kidney:	n/a	chr15:33536765-33536786 chr15:33536776-33536785 chr15:33536737-33536758

Variant related genes	Relation type
TMCO5B	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10048010	0.90[ASN][1000 genomes]
rs1113180	0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1113181	0.90[ASN][1000 genomes]
rs1316743	0.90[ASN][1000 genomes]
rs1399073	0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1399074	0.85[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs17235868	0.90[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs2175853	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs28442156	0.90[ASN][1000 genomes]
rs28558779	0.90[ASN][1000 genomes]
rs2879375	0.85[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs6494998	0.89[ASN][1000 genomes]
rs7182075	0.90[ASN][1000 genomes]
rs8025827	0.86[ASN][1000 genomes]
rs8032732	0.90[ASN][1000 genomes]
rs988305	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33533400-33537400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:33533600-33537000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:33533600-33537000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:33533600-33537000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:33533600-33538200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr15:33533600-33539000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:33534200-33537800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:33535200-33537000	Enhancers	NH-A	brain
9	chr15:33535200-33537600	Enhancers	NHEK	skin
10	chr15:33535400-33537000	Enhancers	HMEC	breast
11	chr15:33535600-33549000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:33536000-33537600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:33536200-33537200	Enhancers	Placenta	Placenta
14	chr15:33536200-33538200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:33536600-33537000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:33536600-33537200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:33536600-33537400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:33536600-33537400	Enhancers	A549	lung
19	chr15:33536600-33538000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr15:33536600-33538200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr15:33536600-33539000	Enhancers	Fetal Thymus	thymus
22	chr15:33536800-33537400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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