Variant report

Variant	rs8025827
Chromosome Location	chr15:33535651-33535652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:33535192-33536466	MCF10A-Er-Src	breast:	n/a	chr15:33536310-33536319 chr15:33535777-33535785 chr15:33536308-33536319 chr15:33536254-33536263 chr15:33536309-33536318
2	STAT3	chr15:33535649-33535824	MCF10A-Er-Src	breast:	n/a	chr15:33535707-33535718
3	FOS	chr15:33535107-33536537	MCF10A-Er-Src	breast:	n/a	chr15:33536310-33536319 chr15:33535777-33535785 chr15:33536308-33536319 chr15:33536254-33536263 chr15:33536309-33536318
4	FOS	chr15:33534344-33536538	MCF10A-Er-Src	breast:	n/a	chr15:33536310-33536319 chr15:33535777-33535785 chr15:33536308-33536319 chr15:33536254-33536263 chr15:33536309-33536318
5	FOS	chr15:33535216-33535877	MCF10A-Er-Src	breast:	n/a	chr15:33535777-33535785
6	JUND	chr15:33534265-33536631	SK-N-SH	brain:	n/a	chr15:33536310-33536319 chr15:33536308-33536319 chr15:33536556-33536570 chr15:33535777-33535785 chr15:33536254-33536263 chr15:33536309-33536318

Variant related genes	Relation type
TMCO5B	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2048660	0.86[ASN][1000 genomes]
rs2175853	0.88[ASN][1000 genomes]
rs2879375	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33533400-33537400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:33533600-33537000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:33533600-33537000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:33533600-33537000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:33533600-33538200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr15:33533600-33539000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:33533800-33536200	Enhancers	A549	lung
8	chr15:33533800-33536600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:33534000-33536400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:33534000-33536600	Enhancers	Osteobl	bone
11	chr15:33534200-33536000	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr15:33534200-33536600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr15:33534200-33537800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr15:33534800-33535800	Enhancers	Placenta	Placenta
15	chr15:33534800-33536200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr15:33535000-33536000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:33535000-33536200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:33535000-33536600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:33535000-33536600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:33535000-33536600	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:33535200-33537000	Enhancers	NH-A	brain
22	chr15:33535200-33537600	Enhancers	NHEK	skin
23	chr15:33535400-33536600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:33535400-33536600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:33535400-33536600	Weak transcription	Fetal Thymus	thymus
26	chr15:33535400-33536800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:33535400-33537000	Enhancers	HMEC	breast
28	chr15:33535600-33536400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:33535600-33549000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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