Variant report

Variant	rs2175853
Chromosome Location	chr15:33536553-33536554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr15:33536002-33536666	A549	lung:	n/a	n/a
2	FOSL2	chr15:33535956-33536651	A549	lung:	n/a	chr15:33536310-33536319 chr15:33536556-33536570 chr15:33536254-33536263 chr15:33536309-33536318
3	SP1	chr15:33536011-33536654	A549	lung:	n/a	n/a
4	SP1	chr15:33535999-33536586	A549	lung:	n/a	n/a
5	NR3C1	chr15:33536026-33536567	A549	lung:	n/a	n/a
6	MAX	chr15:33535903-33536622	A549	lung:	n/a	chr15:33536310-33536319
7	CEBPB	chr15:33536053-33536597	A549	lung:	n/a	n/a
8	MAX	chr15:33535961-33536556	A549	lung:	n/a	chr15:33536310-33536319
9	TCF12	chr15:33535985-33536719	A549	lung:	n/a	n/a
10	JUND	chr15:33534265-33536631	SK-N-SH	brain:	n/a	chr15:33536310-33536319 chr15:33536308-33536319 chr15:33536556-33536570 chr15:33535777-33535785 chr15:33536254-33536263 chr15:33536309-33536318
11	GATA3	chr15:33535871-33536755	A549	lung:	n/a	n/a
12	FOXA2	chr15:33536120-33536623	A549	lung:	n/a	n/a

Variant related genes	Relation type
TMCO5B	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10048010	0.88[ASN][1000 genomes]
rs1113180	0.89[CEU][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs1113181	0.90[ASN][1000 genomes]
rs1316743	0.88[ASN][1000 genomes]
rs1399073	0.84[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.88[ASN][1000 genomes]
rs1399074	0.84[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.88[ASN][1000 genomes]
rs17235868	0.89[CEU][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.90[ASN][1000 genomes]
rs2048660	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs28442156	0.90[ASN][1000 genomes]
rs28558779	0.90[ASN][1000 genomes]
rs2879375	0.88[CEU][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs6494998	0.87[ASN][1000 genomes]
rs7182075	0.88[ASN][1000 genomes]
rs8025827	0.88[ASN][1000 genomes]
rs8032732	0.88[ASN][1000 genomes]
rs988305	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv903983	chr15:33388030-33550256	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33533400-33537400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:33533600-33537000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr15:33533600-33537000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr15:33533600-33537000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:33533600-33538200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr15:33533600-33539000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:33533800-33536600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:33534000-33536600	Enhancers	Osteobl	bone
9	chr15:33534200-33536600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr15:33534200-33537800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:33535000-33536600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:33535000-33536600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:33535000-33536600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr15:33535200-33537000	Enhancers	NH-A	brain
15	chr15:33535200-33537600	Enhancers	NHEK	skin
16	chr15:33535400-33536600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr15:33535400-33536600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:33535400-33536600	Weak transcription	Fetal Thymus	thymus
19	chr15:33535400-33536800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:33535400-33537000	Enhancers	HMEC	breast
21	chr15:33535600-33549000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr15:33536000-33537600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:33536200-33536600	Flanking Active TSS	A549	lung
24	chr15:33536200-33537200	Enhancers	Placenta	Placenta
25	chr15:33536200-33538200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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