Variant report
| Variant | rs2051464 |
|---|---|
| Chromosome Location | chr11:94012670-94012671 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:94005143..94008491-chr11:94011784..94016089,4 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FOLR4-3 | chr11:94012640-94012711 | l_534_chr11:94010604-94016958_testes |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs11020719 | 0.81[EUR][1000 genomes] |
| rs1257950 | 0.87[EUR][1000 genomes] |
| rs12803129 | 0.82[EUR][1000 genomes] |
| rs1361929 | 0.85[EUR][1000 genomes] |
| rs1541299 | 0.87[EUR][1000 genomes] |
| rs1541301 | 0.81[CEU][hapmap] |
| rs16920039 | 0.82[CEU][hapmap] |
| rs1789652 | 0.82[CEU][hapmap] |
| rs1833063 | 0.82[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs3020004 | 0.85[CEU][hapmap] |
| rs3020016 | 0.92[CEU][hapmap] |
| rs4753569 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs519834 | 0.83[EUR][1000 genomes] |
| rs528327 | 0.87[EUR][1000 genomes] |
| rs532037 | 0.86[EUR][1000 genomes] |
| rs545450 | 0.84[EUR][1000 genomes] |
| rs552267 | 0.85[EUR][1000 genomes] |
| rs556758 | 0.85[EUR][1000 genomes] |
| rs579574 | 0.85[EUR][1000 genomes] |
| rs581123 | 0.83[EUR][1000 genomes] |
| rs584109 | 0.87[EUR][1000 genomes] |
| rs603157 | 0.84[EUR][1000 genomes] |
| rs6483324 | 0.83[EUR][1000 genomes] |
| rs655358 | 0.81[EUR][1000 genomes] |
| rs656810 | 0.84[EUR][1000 genomes] |
| rs657242 | 0.84[EUR][1000 genomes] |
| rs669634 | 0.85[EUR][1000 genomes] |
| rs672392 | 0.96[EUR][1000 genomes] |
| rs688910 | 0.84[EUR][1000 genomes] |
| rs7115129 | 0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7130456 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7944234 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv523083 | chr11:93962121-94150790 | Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv832233 | chr11:93981434-94158471 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:94011600-94017000 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 2 | chr11:94011800-94017200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
