Variant report

Variant	rs12803129
Chromosome Location	chr11:94020145-94020146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOLR4-2	chr11:94020127-94020204	l_535_chr11:94020126-94024461_testes

Extended variants
information (count: 52 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1014499	0.82[EUR][1000 genomes]
rs10765657	0.80[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10765658	0.82[EUR][1000 genomes]
rs10765660	0.82[EUR][1000 genomes]
rs10831173	0.81[EUR][1000 genomes]
rs10831184	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11020703	0.82[EUR][1000 genomes]
rs11020719	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12366039	0.82[EUR][1000 genomes]
rs1257950	0.83[AMR][1000 genomes]
rs12792677	0.82[EUR][1000 genomes]
rs12808853	0.82[EUR][1000 genomes]
rs1361929	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1541299	0.82[AMR][1000 genomes]
rs1541301	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap]
rs16920039	0.85[CEU][hapmap]
rs1789652	0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1833063	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1857680	0.82[EUR][1000 genomes]
rs1944436	0.81[EUR][1000 genomes]
rs2000956	0.82[EUR][1000 genomes]
rs2051464	0.82[EUR][1000 genomes]
rs2156627	0.80[EUR][1000 genomes]
rs3020004	0.89[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs3020016	0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]
rs4753131	0.82[EUR][1000 genomes]
rs4753132	0.82[EUR][1000 genomes]
rs4753569	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs480710	0.84[EUR][1000 genomes]
rs519834	0.82[AMR][1000 genomes]
rs528327	0.83[AMR][1000 genomes]
rs532037	0.82[AMR][1000 genomes]
rs552267	0.82[AMR][1000 genomes]
rs556758	0.82[AMR][1000 genomes]
rs579574	0.82[AMR][1000 genomes]
rs581123	0.82[AMR][1000 genomes]
rs581771	0.84[EUR][1000 genomes]
rs613234	0.84[EUR][1000 genomes]
rs61907582	0.82[EUR][1000 genomes]
rs6483324	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655358	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs669634	0.82[AMR][1000 genomes]
rs672392	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs689315	0.84[EUR][1000 genomes]
rs7106476	0.86[EUR][1000 genomes]
rs7115129	0.93[EUR][1000 genomes]
rs7118270	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7130456	0.95[EUR][1000 genomes]
rs7936241	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7944234	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12803129	RP11-680H20.2	cis	Artery Tibial	GTEx
rs12803129	PANX1	cis	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94018000-94026600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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