Variant report

Variant	rs7944234
Chromosome Location	chr11:94022099-94022100
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1014499	0.83[EUR][1000 genomes]
rs10765657	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10765658	0.82[EUR][1000 genomes]
rs10765660	0.83[EUR][1000 genomes]
rs10831173	0.81[EUR][1000 genomes]
rs10831174	0.80[EUR][1000 genomes]
rs10831176	0.80[EUR][1000 genomes]
rs10831184	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11020703	0.83[EUR][1000 genomes]
rs11020719	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12366039	0.83[EUR][1000 genomes]
rs1257950	0.86[AMR][1000 genomes]
rs12792677	0.83[EUR][1000 genomes]
rs12803129	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808853	0.83[EUR][1000 genomes]
rs1361929	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1541299	0.85[AMR][1000 genomes]
rs1541301	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs16920039	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs1789652	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs1833063	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1857680	0.82[EUR][1000 genomes]
rs1944436	0.81[EUR][1000 genomes]
rs2000956	0.82[EUR][1000 genomes]
rs2051464	0.84[EUR][1000 genomes]
rs2156627	0.81[EUR][1000 genomes]
rs3020004	0.92[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[EUR][1000 genomes]
rs3020016	0.96[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.80[EUR][1000 genomes]
rs4753131	0.83[EUR][1000 genomes]
rs4753132	0.83[EUR][1000 genomes]
rs4753569	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs480710	0.85[EUR][1000 genomes]
rs519834	0.85[AMR][1000 genomes]
rs528327	0.86[AMR][1000 genomes]
rs532037	0.85[AMR][1000 genomes]
rs545450	0.81[AMR][1000 genomes]
rs552267	0.85[AMR][1000 genomes]
rs556758	0.85[AMR][1000 genomes]
rs579574	0.85[AMR][1000 genomes]
rs581123	0.85[AMR][1000 genomes]
rs581771	0.85[EUR][1000 genomes]
rs584109	0.82[AMR][1000 genomes]
rs603157	0.81[AMR][1000 genomes]
rs613234	0.85[EUR][1000 genomes]
rs61907582	0.83[EUR][1000 genomes]
rs6483324	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs655358	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs656810	0.81[AMR][1000 genomes]
rs657242	0.81[AMR][1000 genomes]
rs669634	0.85[AMR][1000 genomes]
rs672392	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs688910	0.81[AMR][1000 genomes]
rs689315	0.85[EUR][1000 genomes]
rs7106476	0.87[EUR][1000 genomes]
rs7115129	0.96[EUR][1000 genomes]
rs7118270	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7130456	0.96[EUR][1000 genomes]
rs7936241	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7944234	RP11-680H20.2	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94018000-94026600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr11:94021800-94022200	Enhancers	Pancreas	Pancrea

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