Variant report

Variant	rs7106476
Chromosome Location	chr11:94035172-94035173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11020719	0.82[EUR][1000 genomes]
rs12803129	0.86[EUR][1000 genomes]
rs1361929	0.86[EUR][1000 genomes]
rs61907582	0.80[AMR][1000 genomes]
rs61907585	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6483324	0.87[EUR][1000 genomes]
rs655358	0.82[EUR][1000 genomes]
rs7115129	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7130456	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7944234	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7106476	RP11-680H20.2	cis	Artery Tibial	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94029800-94038000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr11:94030600-94036800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:94031200-94038800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:94034400-94035400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:94034400-94035600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:94034400-94035800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:94034600-94035600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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