Variant report

Variant	rs2057130
Chromosome Location	chr14:64961479-64961480
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64957408..64961833-chr14:64968982..64972745,8	MCF-7	breast:
2	chr14:64953130..64954814-chr14:64960010..64961736,2	MCF-7	breast:
3	chr14:64959822..64962033-chr14:64973410..64976563,3	K562	blood:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10133855	0.89[CEU][hapmap]
rs1256142	0.89[CEU][hapmap]
rs1256144	0.83[AMR][1000 genomes]
rs13329053	0.89[CEU][hapmap];0.82[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1453008	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1542313	0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1742159	0.89[CEU][hapmap];0.85[AMR][1000 genomes]
rs2236224	0.96[CEU][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.87[AMR][1000 genomes]
rs2236225	0.81[CEU][hapmap]
rs7152440	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs761546	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8003790	0.81[AMR][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs2057130	MPP5	cis	parietal	SCAN
rs2057130	ZBTB25	cis	cerebellum	SCAN
rs2057130	PRKCH	cis	parietal	SCAN
rs2057130	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs2057130	ZBTB25	cis	multi-tissue	Pritchard
rs2057130	ZBTB25	cis	parietal	SCAN
rs2057130	SIX1	cis	cerebellum	SCAN
rs2057130	ZBTB1	cis	cerebellum	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
4	chr14:64950000-64968200	Weak transcription	Colonic Mucosa	Colon
5	chr14:64950400-64963000	Strong transcription	Fetal Thymus	thymus
6	chr14:64950600-64967800	Weak transcription	HUVEC	blood vessel
7	chr14:64952200-64968000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:64953200-64968200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr14:64954600-64962000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr14:64954600-64966600	Weak transcription	HepG2	liver
11	chr14:64954600-64968000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:64954600-64968200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr14:64954600-64968400	Weak transcription	Esophagus	oesophagus
14	chr14:64954600-64968400	Weak transcription	Gastric	stomach
15	chr14:64954600-64968400	Weak transcription	Pancreas	Pancrea
16	chr14:64954800-64962000	Weak transcription	Aorta	Aorta
17	chr14:64954800-64966200	Weak transcription	Small Intestine	intestine
18	chr14:64954800-64966400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr14:64954800-64966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr14:64954800-64968200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:64954800-64968200	Weak transcription	HSMMtube	muscle
22	chr14:64954800-64968400	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr14:64954800-64968400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:64954800-64968400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:64954800-64968400	Weak transcription	Spleen	Spleen
26	chr14:64954800-64969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:64955000-64961800	Weak transcription	Brain Angular Gyrus	brain
28	chr14:64955000-64968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr14:64955000-64968200	Weak transcription	Brain Substantia Nigra	brain
30	chr14:64955200-64961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr14:64955200-64963600	Weak transcription	NH-A	brain
32	chr14:64955200-64964600	Weak transcription	A549	lung
33	chr14:64955200-64967800	Weak transcription	NHDF-Ad	bronchial
34	chr14:64955200-64968000	Weak transcription	Brain Hippocampus Middle	brain
35	chr14:64955200-64968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr14:64955200-64968200	Weak transcription	Right Ventricle	heart
37	chr14:64955400-64961800	Weak transcription	Colon Smooth Muscle	Colon
38	chr14:64955400-64966600	Weak transcription	Duodenum Mucosa	Duodenum
39	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr14:64955400-64968200	Weak transcription	Fetal Kidney	kidney
42	chr14:64955600-64961800	Weak transcription	Osteobl	bone
43	chr14:64955600-64968200	Weak transcription	Placenta	Placenta
44	chr14:64955600-64968200	Weak transcription	NHLF	lung
45	chr14:64955800-64968200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr14:64955800-64968400	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr14:64956000-64964600	Weak transcription	Fetal Lung	lung
48	chr14:64956000-64967800	Weak transcription	Brain Germinal Matrix	brain
49	chr14:64956000-64968400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr14:64956200-64961800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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