Variant report

Variant	rs1453008
Chromosome Location	chr14:64979522-64979523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64979365..64981317-chr14:65073595..65075392,2	K562	blood:
2	chr14:64854562..64856178-chr14:64977120..64979852,2	K562	blood:

Variant related genes	Relation type
ENSG00000100714	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10782452	0.82[EUR][1000 genomes]
rs10873174	0.85[EUR][1000 genomes]
rs11622168	0.84[EUR][1000 genomes]
rs11622941	0.83[EUR][1000 genomes]
rs12323845	0.80[EUR][1000 genomes]
rs1256142	0.81[EUR][1000 genomes]
rs1256144	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12879827	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13329053	0.99[AFR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1542313	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17113846	0.83[EUR][1000 genomes]
rs1742159	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17824845	0.84[EUR][1000 genomes]
rs2038271	0.85[EUR][1000 genomes]
rs2057130	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2236225	0.80[AMR][1000 genomes]
rs3742604	0.85[EUR][1000 genomes]
rs4902291	0.87[EUR][1000 genomes]
rs4902293	0.85[EUR][1000 genomes]
rs7152440	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs761546	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003790	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9944101	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521823	chr14:64969342-64995694	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1453008	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64972800-64988400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:64972800-64991600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:64973200-64987800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:64973800-64980000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr14:64974000-64984400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr14:64974400-64988200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:64974400-64988400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:64974800-64980000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:64974800-64988600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:64974800-64999400	Weak transcription	Fetal Brain Male	brain
11	chr14:64974800-65006000	Weak transcription	Ovary	ovary
12	chr14:64975000-64988400	Weak transcription	HSMMtube	muscle
13	chr14:64975200-64987600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:64975200-64988200	Weak transcription	Fetal Muscle Leg	muscle
15	chr14:64975200-64988600	Weak transcription	Fetal Stomach	stomach
16	chr14:64976000-64981000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:64976000-64981000	Weak transcription	Aorta	Aorta
18	chr14:64976000-64988400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:64976000-64995400	Weak transcription	Gastric	stomach
20	chr14:64976000-64996600	Weak transcription	Esophagus	oesophagus
21	chr14:64976000-65006000	Weak transcription	Brain Germinal Matrix	brain
22	chr14:64976200-64979600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr14:64976200-64980000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr14:64976200-64988200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr14:64976200-64988200	Weak transcription	Fetal Intestine Large	intestine
26	chr14:64976200-64988200	Weak transcription	Placenta	Placenta
27	chr14:64976200-64988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:64976200-64991800	Weak transcription	Stomach Mucosa	stomach
29	chr14:64976800-64980000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr14:64976800-64980200	Enhancers	Fetal Heart	heart
31	chr14:64976800-64982600	Weak transcription	Left Ventricle	heart
32	chr14:64977200-64979800	Enhancers	Adipose Nuclei	Adipose
33	chr14:64977200-64979800	Enhancers	Liver	Liver
34	chr14:64977600-64988200	Weak transcription	Right Ventricle	heart
35	chr14:64977800-64981000	Weak transcription	NHDF-Ad	bronchial
36	chr14:64977800-64981400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr14:64977800-64981400	Weak transcription	NHLF	lung
38	chr14:64977800-64981600	Enhancers	Primary T cells from cord blood	blood
39	chr14:64977800-64982000	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr14:64977800-64983200	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr14:64977800-64988400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr14:64977800-64991600	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr14:64977800-64992200	Weak transcription	Colonic Mucosa	Colon
44	chr14:64977800-64993600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr14:64978000-64979600	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr14:64978000-64979600	Genic enhancers	Dnd41	blood
47	chr14:64978000-64979800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr14:64978000-64980000	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr14:64978000-64981000	Weak transcription	Psoas Muscle	Psoas
50	chr14:64978000-64983200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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