Variant report

Variant	rs17824845
Chromosome Location	chr14:65039860-65039861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64909070..64910820-chr14:65039192..65042111,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10782452	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10873174	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11622168	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11622941	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12323845	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12436296	0.88[ASN][1000 genomes]
rs1256144	0.80[EUR][1000 genomes]
rs12884911	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13329053	0.84[EUR][1000 genomes]
rs1453008	0.84[EUR][1000 genomes]
rs1542313	0.81[EUR][1000 genomes]
rs17113846	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1742159	0.85[EUR][1000 genomes]
rs2038271	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3742604	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902291	0.89[EUR][1000 genomes]
rs4902293	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4902303	0.88[ASN][1000 genomes]
rs6573560	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66939314	0.87[ASN][1000 genomes]
rs7152440	0.85[EUR][1000 genomes]
rs761546	0.84[EUR][1000 genomes]
rs9944101	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17824845	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
2	chr14:65033400-65040000	Weak transcription	Gastric	stomach
3	chr14:65033800-65040000	Weak transcription	Esophagus	oesophagus
4	chr14:65036000-65041600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:65036200-65044000	Weak transcription	Fetal Kidney	kidney
6	chr14:65038600-65040400	Enhancers	Rectal Smooth Muscle	rectum
7	chr14:65039000-65040200	Enhancers	Fetal Lung	lung
8	chr14:65039000-65040400	Enhancers	Colon Smooth Muscle	Colon
9	chr14:65039000-65041400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:65039000-65041800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr14:65039000-65041800	Enhancers	Brain Substantia Nigra	brain
12	chr14:65039200-65040200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr14:65039200-65040200	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr14:65039200-65040200	Flanking Active TSS	Brain Cingulate Gyrus	brain
15	chr14:65039200-65040200	Enhancers	Hela-S3	cervix
16	chr14:65039200-65040400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:65039200-65040400	Enhancers	Fetal Stomach	stomach
18	chr14:65039200-65041000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr14:65039200-65041600	Enhancers	Fetal Muscle Leg	muscle
20	chr14:65039400-65040200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr14:65039400-65040200	Enhancers	H9 Cell Line	embryonic stem cell
22	chr14:65039400-65040200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:65039400-65040200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr14:65039400-65040200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr14:65039400-65040200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:65039400-65040200	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr14:65039400-65040200	Enhancers	Adipose Nuclei	Adipose
28	chr14:65039400-65040200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr14:65039400-65040200	Enhancers	Psoas Muscle	Psoas
30	chr14:65039400-65040200	Enhancers	Right Atrium	heart
31	chr14:65039400-65040200	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr14:65039400-65040400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr14:65039400-65040400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr14:65039400-65040400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:65039400-65040800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr14:65039600-65040000	Active TSS	Brain Hippocampus Middle	brain
37	chr14:65039600-65040000	Flanking Active TSS	Fetal Brain Male	brain
38	chr14:65039600-65040200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr14:65039600-65040200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr14:65039600-65040200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
41	chr14:65039600-65040200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:65039600-65040200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:65039600-65040200	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr14:65039600-65040400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:65039800-65040000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr14:65039800-65040000	Enhancers	HSMMtube	muscle
47	chr14:65039800-65040200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr14:65039800-65040200	Enhancers	Aorta	Aorta
49	chr14:65039800-65040200	Flanking Active TSS	Brain Angular Gyrus	brain
50	chr14:65039800-65040200	Flanking Active TSS	Brain Germinal Matrix	brain

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