Variant report

Variant	rs4902303
Chromosome Location	chr14:65117177-65117178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65116281..65118430-chr14:65188317..65189997,2	MCF-7	breast:
2	chr14:64969948..64971989-chr14:65116730..65119122,2	MCF-7	breast:
3	chr14:65106953..65109220-chr14:65116846..65120872,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10782452	0.86[ASN][1000 genomes]
rs11158554	0.80[ASN][1000 genomes]
rs11158555	0.80[ASN][1000 genomes]
rs12431555	0.80[ASN][1000 genomes]
rs12432551	0.80[ASN][1000 genomes]
rs12435904	0.84[ASN][1000 genomes]
rs12436296	0.95[ASN][1000 genomes]
rs12893758	0.81[ASN][1000 genomes]
rs17113846	0.91[ASN][1000 genomes]
rs17824845	0.88[ASN][1000 genomes]
rs1950302	0.81[ASN][1000 genomes]
rs1956420	0.82[ASN][1000 genomes]
rs7143298	0.87[ASN][1000 genomes]
rs733127	0.82[ASN][1000 genomes]
rs9944101	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4902303	ZBTB1	cis	Nerve Tibial	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65113000-65121000	Weak transcription	Fetal Heart	heart
2	chr14:65115800-65117800	Enhancers	A549	lung
3	chr14:65115800-65120600	Weak transcription	NH-A	brain
4	chr14:65116200-65117800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:65116400-65120600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:65116400-65121000	Weak transcription	Pancreas	Pancrea
7	chr14:65116600-65120400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr14:65116600-65120400	Weak transcription	Osteobl	bone
9	chr14:65116600-65120600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:65116600-65120600	Weak transcription	Adipose Nuclei	Adipose
11	chr14:65116600-65120600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr14:65116600-65120600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr14:65116800-65120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr14:65116800-65120400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:65116800-65120600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:65116800-65120600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:65116800-65121200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr14:65116800-65121200	Weak transcription	Spleen	Spleen
19	chr14:65116800-65125000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:65117000-65117400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr14:65117000-65117400	Weak transcription	Fetal Muscle Leg	muscle
22	chr14:65117000-65120400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:65117000-65120600	Weak transcription	Liver	Liver
24	chr14:65117000-65120600	Weak transcription	Placenta	Placenta
25	chr14:65117000-65128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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