Variant report

Variant	rs7143298
Chromosome Location	chr14:65119998-65119999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64968793..64973673-chr14:65119564..65122078,5	MCF-7	breast:
2	chr14:65106953..65109220-chr14:65116846..65120872,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10873174	0.91[CHB][hapmap]
rs11158554	0.89[ASN][1000 genomes]
rs11158555	0.89[ASN][1000 genomes]
rs11622168	0.91[CHB][hapmap]
rs11848238	0.87[ASN][1000 genomes]
rs12431555	0.89[ASN][1000 genomes]
rs12432551	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12435904	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12436296	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs12884911	0.91[CHB][hapmap]
rs12893758	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17113846	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1950302	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1956419	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1956420	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3742604	0.91[CHB][hapmap]
rs4902293	0.91[CHB][hapmap]
rs4902303	0.87[ASN][1000 genomes]
rs6573560	0.91[CHB][hapmap]
rs7143397	0.87[ASN][1000 genomes]
rs733127	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9944101	0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1008915	chr14:65117194-65126733	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65113000-65121000	Weak transcription	Fetal Heart	heart
2	chr14:65115800-65120600	Weak transcription	NH-A	brain
3	chr14:65116400-65120600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:65116400-65121000	Weak transcription	Pancreas	Pancrea
5	chr14:65116600-65120400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr14:65116600-65120400	Weak transcription	Osteobl	bone
7	chr14:65116600-65120600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:65116600-65120600	Weak transcription	Adipose Nuclei	Adipose
9	chr14:65116600-65120600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:65116600-65120600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:65116800-65120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:65116800-65120400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr14:65116800-65120600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:65116800-65120600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:65116800-65121200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:65116800-65121200	Weak transcription	Spleen	Spleen
17	chr14:65116800-65125000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:65117000-65120400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:65117000-65120600	Weak transcription	Liver	Liver
20	chr14:65117000-65120600	Weak transcription	Placenta	Placenta
21	chr14:65117000-65128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr14:65117800-65120600	Weak transcription	A549	lung
23	chr14:65117800-65121000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:65118600-65120200	Weak transcription	Fetal Muscle Leg	muscle
25	chr14:65119200-65121200	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr14:65119400-65121200	Weak transcription	Psoas Muscle	Psoas

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