Variant report

Variant	rs9944101
Chromosome Location	chr14:65048794-65048795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:65048740-65048890	GM12869	blood:	n/a	n/a

Variant related genes	Relation type
PPP1R36	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10133855	0.85[CEU][hapmap]
rs10782452	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10873174	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11622168	0.92[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11622941	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12323845	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12435904	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12436296	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1256142	0.84[CEU][hapmap]
rs12884911	0.95[CHB][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13329053	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1453008	0.83[EUR][1000 genomes]
rs1542313	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs17113846	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1742159	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs17824845	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1950302	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1956419	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2038271	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3742604	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4902291	0.88[EUR][1000 genomes]
rs4902293	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4902303	0.90[ASN][1000 genomes]
rs6573560	0.81[CEU][hapmap];0.95[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66939314	0.84[ASN][1000 genomes]
rs7143298	0.91[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs7152440	0.84[EUR][1000 genomes]
rs761546	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9944101	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65040200-65051200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65046800-65049000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65047200-65049000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:65047200-65049000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr14:65047200-65049000	Enhancers	HUVEC	blood vessel
7	chr14:65047200-65049200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr14:65047200-65049200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:65047200-65049400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:65047400-65049000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:65047400-65049400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr14:65047400-65049400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr14:65047400-65049600	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr14:65047600-65048800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr14:65047600-65048800	Enhancers	Pancreas	Pancrea
16	chr14:65047600-65049000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:65047600-65049200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr14:65047800-65048800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:65047800-65049000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:65047800-65049000	Enhancers	Psoas Muscle	Psoas
21	chr14:65047800-65049200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr14:65047800-65059000	Weak transcription	Gastric	stomach
23	chr14:65048000-65048800	Enhancers	Primary hematopoietic stem cells	blood
24	chr14:65048000-65049000	Enhancers	H1 Cell Line	embryonic stem cell
25	chr14:65048000-65049000	Enhancers	H9 Cell Line	embryonic stem cell
26	chr14:65048000-65049400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr14:65048000-65051000	Weak transcription	Colon Smooth Muscle	Colon
28	chr14:65048000-65051000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr14:65048200-65049000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr14:65048600-65048800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr14:65048600-65048800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:65048600-65049000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr14:65048600-65049200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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