Variant report

Variant	rs12323845
Chromosome Location	chr14:65030211-65030212
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65028883..65030664-chr14:65044545..65046516,2	K562	blood:
2	chr14:65026787..65029450-chr14:65030177..65032001,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10782452	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10873174	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11622168	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622941	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12879827	0.81[EUR][1000 genomes]
rs12884911	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13329053	0.80[EUR][1000 genomes]
rs1453008	0.80[EUR][1000 genomes]
rs1542313	0.83[EUR][1000 genomes]
rs17113846	0.91[EUR][1000 genomes]
rs1742159	0.81[EUR][1000 genomes]
rs17824845	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2038271	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742604	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902291	0.86[EUR][1000 genomes]
rs4902293	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6573560	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66939314	0.99[ASN][1000 genomes]
rs7152440	0.81[EUR][1000 genomes]
rs761546	0.80[EUR][1000 genomes]
rs8003790	0.82[EUR][1000 genomes]
rs9944101	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12323845	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021400-65033400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
3	chr14:65023400-65033400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:65027800-65030600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr14:65028000-65033400	Weak transcription	Psoas Muscle	Psoas
6	chr14:65028200-65030800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:65028200-65031600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr14:65028200-65033400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr14:65028200-65033400	Weak transcription	A549	lung
10	chr14:65028200-65039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr14:65028400-65033400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:65028400-65033400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:65028800-65033400	Weak transcription	Hela-S3	cervix
14	chr14:65029200-65031800	Enhancers	Brain Anterior Caudate	brain
15	chr14:65029200-65032200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr14:65029200-65033200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr14:65029200-65033200	Enhancers	Brain Substantia Nigra	brain
18	chr14:65029200-65035800	Weak transcription	Placenta	Placenta
19	chr14:65029400-65030400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:65029400-65033200	Weak transcription	Adipose Nuclei	Adipose
21	chr14:65029400-65033200	Weak transcription	Right Atrium	heart
22	chr14:65029400-65035600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr14:65029400-65039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr14:65030000-65030400	Enhancers	Brain Angular Gyrus	brain
25	chr14:65030000-65030400	Enhancers	Brain Hippocampus Middle	brain
26	chr14:65030000-65030600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:65030000-65030800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr14:65030000-65030800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:65030200-65030600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:65030200-65030600	Flanking Active TSS	Brain Cingulate Gyrus	brain
31	chr14:65030200-65031000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr14:65030200-65031600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links