Variant report

Variant	rs17113846
Chromosome Location	chr14:65065696-65065697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10782452	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10873174	0.95[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11622168	0.87[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11622941	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12323845	0.91[EUR][1000 genomes]
rs12435904	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs12436296	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12884911	0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12893758	0.80[ASN][1000 genomes]
rs13329053	0.83[EUR][1000 genomes]
rs1453008	0.83[EUR][1000 genomes]
rs1742159	0.84[EUR][1000 genomes]
rs17824845	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1950302	0.86[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs1956419	0.95[JPT][hapmap]
rs1956420	0.82[ASN][1000 genomes]
rs2038271	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3742604	0.95[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4902291	0.86[EUR][1000 genomes]
rs4902293	0.95[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4902303	0.91[ASN][1000 genomes]
rs6573560	0.82[CHB][hapmap];0.81[EUR][1000 genomes]
rs7143298	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7152440	0.82[EUR][1000 genomes]
rs733127	0.81[ASN][1000 genomes]
rs761546	0.83[EUR][1000 genomes]
rs9944101	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv974347	chr14:65062237-65068257	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17113846	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65048800-65068400	Weak transcription	Pancreas	Pancrea
2	chr14:65065000-65065800	Enhancers	GM12878-XiMat	blood
3	chr14:65065000-65066200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr14:65065200-65065800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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