Variant report

Variant	rs2038271
Chromosome Location	chr14:65028728-65028729
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65026787..65029450-chr14:65030177..65032001,2	K562	blood:
2	chr14:65007240..65009229-chr14:65027926..65029711,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126803	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10782452	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10873174	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11622168	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622941	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12323845	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1256144	0.81[EUR][1000 genomes]
rs12884911	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13329053	0.85[EUR][1000 genomes]
rs1453008	0.85[EUR][1000 genomes]
rs1542313	0.82[EUR][1000 genomes]
rs17113846	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1742159	0.86[EUR][1000 genomes]
rs17824845	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3742604	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902291	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4902293	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6573560	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66939314	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7152440	0.86[EUR][1000 genomes]
rs761546	0.84[EUR][1000 genomes]
rs9944101	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2038271	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021400-65033400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
3	chr14:65023400-65033400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:65023800-65028800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:65025000-65030200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr14:65027600-65028800	Enhancers	Hela-S3	cervix
7	chr14:65027800-65030600	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr14:65028000-65033400	Weak transcription	Psoas Muscle	Psoas
9	chr14:65028200-65030000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr14:65028200-65030800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:65028200-65031600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr14:65028200-65033400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:65028200-65033400	Weak transcription	A549	lung
14	chr14:65028200-65039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr14:65028400-65028800	Enhancers	Right Atrium	heart
16	chr14:65028400-65029200	Weak transcription	Brain Anterior Caudate	brain
17	chr14:65028400-65029200	Enhancers	Placenta	Placenta
18	chr14:65028400-65033400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr14:65028400-65033400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:65028600-65029200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr14:65028600-65029400	Enhancers	Adipose Nuclei	Adipose
22	chr14:65028600-65030000	Weak transcription	Brain Angular Gyrus	brain

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