Variant report

Variant	rs1742159
Chromosome Location	chr14:64946191-64946192
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64945836..64948342-chr14:64969115..64971703,3	K562	blood:
2	chr14:64808415..64811842-chr14:64942853..64946477,3	K562	blood:
3	chr14:64852943..64855258-chr14:64944009..64946948,2	MCF-7	breast:
4	chr14:64943497..64946226-chr14:64970959..64972915,2	K562	blood:
5	chr14:64932117..64934618-chr14:64944304..64946764,2	MCF-7	breast:
6	chr14:64770019..64770582-chr14:64945375..64946228,2	K562	blood:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000179841	Chromatin interaction
ENSG00000100714	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10133855	1.00[CEU][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes]
rs10782452	0.83[EUR][1000 genomes]
rs10873174	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11622168	0.85[EUR][1000 genomes]
rs11622941	0.84[EUR][1000 genomes]
rs12323845	0.81[EUR][1000 genomes]
rs1256142	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1256144	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12879827	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12884911	0.80[EUR][1000 genomes]
rs13329053	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1453008	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1542313	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17113846	0.84[EUR][1000 genomes]
rs17824845	0.85[EUR][1000 genomes]
rs2038271	0.86[EUR][1000 genomes]
rs2057130	0.89[CEU][hapmap];0.85[AMR][1000 genomes]
rs2236224	0.92[CEU][hapmap];0.82[AMR][1000 genomes]
rs2236225	0.92[CEU][hapmap];0.88[AMR][1000 genomes]
rs3742604	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs4902291	0.88[EUR][1000 genomes]
rs4902293	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7152440	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs761546	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8003790	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9944101	0.85[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902022	chr14:64926581-64958638	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1742159	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64928200-64948000	Weak transcription	Hela-S3	cervix
2	chr14:64933000-64946600	Weak transcription	Fetal Thymus	thymus
3	chr14:64933000-64951000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:64933000-64951000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:64933000-64951600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:64933000-64951800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr14:64933000-64952000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:64933000-64953400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:64933000-64953600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr14:64933000-64953600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:64933000-64953600	Weak transcription	Lung	lung
12	chr14:64933000-64953600	Weak transcription	Ovary	ovary
13	chr14:64933000-64953600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:64933000-64953600	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr14:64933000-64953600	Weak transcription	HSMM	muscle
16	chr14:64933000-64953600	Weak transcription	NHLF	lung
17	chr14:64933200-64951000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:64933200-64951000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr14:64933200-64951000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:64933200-64951600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr14:64933200-64951800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr14:64933200-64953600	Weak transcription	Primary B cells from cord blood	blood
23	chr14:64933200-64953600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:64933200-64953600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr14:64933200-64953600	Weak transcription	NHEK	skin
26	chr14:64933200-64953800	Weak transcription	Fetal Brain Female	brain
27	chr14:64933200-64953800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr14:64933400-64946400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr14:64933400-64953600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:64933400-64953600	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:64933400-64953600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr14:64933400-64953600	Weak transcription	Fetal Stomach	stomach
34	chr14:64933400-64953600	Weak transcription	NH-A	brain
35	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr14:64933600-64951600	Weak transcription	Brain Angular Gyrus	brain
37	chr14:64933600-64953600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr14:64933800-64950600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr14:64934000-64953600	Weak transcription	Thymus	Thymus
40	chr14:64934200-64953800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr14:64934400-64951000	Weak transcription	Liver	Liver
42	chr14:64934400-64953600	Weak transcription	Adipose Nuclei	Adipose
43	chr14:64934800-64951800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr14:64935200-64951200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr14:64935200-64951600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr14:64935400-64947200	Weak transcription	Dnd41	blood
47	chr14:64935400-64951600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr14:64935600-64951800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr14:64935600-64953600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr14:64935800-64947800	Weak transcription	Fetal Intestine Small	intestine

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